BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0142.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   100   2e-22
gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...    77   1e-15

>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 100/163 (61%), Gaps = 15/163 (9%)

Query: 23  EAKRLGGGGSIGKQSSGASRQAQSPMQQNQAAAAKPAAPA--AAPAAAAPKP---SPWKG 77
           EAKRLGGGGS GKQSS  SRQA          +A P  P+  AA   +AP P   SPW+ 
Sbjct: 23  EAKRLGGGGSFGKQSSNYSRQAAPSSPSYSQPSATPYRPSTPAATLQSAPMPKPASPWRN 82

Query: 78  ILGGALLGLGLGALLSHFGLGGAMASMISTILMVALLAFAAMFIYRMFRRKSEANSNSNE 137
           +LGGALLG GLGAL+SHFG+GGAM  ++ ++L +ALL  A +F+ RMF R  EA +N+  
Sbjct: 83  VLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIALLCAAVIFLIRMFARGREAQNNN-- 140

Query: 138 RPAYAANQ------GDFSNQTPAIGSQL-EAGQPKALQGNTFG 173
            PAYA         G  +  TP IGS L +   P ALQGN +G
Sbjct: 141 -PAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPALQGNAYG 182


>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 68/92 (73%)

Query: 75  WKGILGGALLGLGLGALLSHFGLGGAMASMISTILMVALLAFAAMFIYRMFRRKSEANSN 134
           WKG+LGGALLGLGLGALLSHFGLGGA+ASMISTIL VAL+A A MF+ RMFRRKSEA+  
Sbjct: 2   WKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEASQP 61

Query: 135 SNERPAYAANQGDFSNQTPAIGSQLEAGQPKA 166
           +      A    D ++ TP IGS L+  Q  A
Sbjct: 62  APAWAGAAPQAADNASATPQIGSMLKTDQSAA 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 433,771
Number of extensions: 14475
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)