BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0139.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   275   6e-75
gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...   221   9e-59

>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  275 bits (702), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 168/361 (46%), Positives = 232/361 (64%), Gaps = 3/361 (0%)

Query: 16  LLPLVAIVFTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQSFSTILSRKFSGSYCD 75
           L P+   VF +FL IG+ LP LPLH+   LG +A  VG VVG Q  + +LSR ++G++ D
Sbjct: 26  LAPITLAVFIAFLTIGLQLPVLPLHLKDALGMNATVVGVVVGAQFAAALLSRAWAGNFAD 85

Query: 76  RHGPKRAVAVGLPMAAAAGLLYLAS-TLIADAGASLEVLFIGRLLMGPAESLFLTGTMTW 134
             G KRAV  G   AA +GL+YLAS  L+     S+ VL +GR+++   ESL +TG M+W
Sbjct: 86  LRGAKRAVMAGFITAALSGLVYLASLALLGRPDWSVAVLLLGRVVLALGESLMVTGAMSW 145

Query: 135 GIGRVGMQRTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAGVALTTMVLPLVGLAIAT 194
           GIG VG Q  GKVMAW GIA++AA G GAP+G+AI Q +GFAG++L ++ L L  L +  
Sbjct: 146 GIGLVGPQHGGKVMAWLGIALYAAFGAGAPLGVAINQIYGFAGISLASVGLSLAALLLIA 205

Query: 195 TLRGLPALGNKGGGVAMSEVLRLIWRFGMALALSAMPFAIITSFLVLLYASNNWSGAGIA 254
            LR +    ++       +VL  +WR G+ LA S++ F +IT+F+ LL+A+  W  A +A
Sbjct: 206 PLRAIAPSAHRR--TPFYQVLGAVWRPGLGLAFSSVGFGVITAFIALLFAARAWGNAALA 263

Query: 255 ILGFSVGYVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLLWQSHDPLMAGLGTLLTGI 314
              F   ++  RL FAHLPD++GGA+V  V V IE  GQLL+WQ+     A LG  LTG 
Sbjct: 264 FSAFGAAFILARLLFAHLPDKLGGARVALVCVLIEAAGQLLIWQADAAHWAYLGAALTGF 323

Query: 315 GFSLVFPSMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPVVGVLIGYFGYGSAFLAG 374
           G+SL FP  GV+AM R P  +RGLA+  ++AF+DL+ G+T P+ GVL  + G  S +LAG
Sbjct: 324 GYSLAFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSLGITSPLAGVLASHAGVQSIYLAG 383

Query: 375 A 375
           A
Sbjct: 384 A 384


>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  221 bits (563), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 146/351 (41%), Positives = 210/351 (59%), Gaps = 5/351 (1%)

Query: 24  FTSFLCIGIPLPALPLHVNGVLGFSALTVGWVVGIQSFSTILSRKFSGSYCDRHGPKRAV 83
           F  +L IGIP+  LP +++  LG+S++  G  + +Q F+T +SR  +G   D  G K+ V
Sbjct: 40  FLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLGISVQYFATFVSRANAGRMIDTVGAKQTV 99

Query: 84  AVGLPMAAAAGLLYLASTLIADAG-ASLEVLFIGRLLMGPAESLFLTGTMTWGIGRVGMQ 142
             G+ + +A+G L L S L       SL +LF  R L+G  ESL  TG + WG+GRVG +
Sbjct: 100 MRGMLLCSASGALLLCSALAQPLPFLSLVLLFASRALLGLGESLVGTGAIMWGVGRVGSE 159

Query: 143 RTGKVMAWQGIAMFAALGLGAPIGIAIQQRFGFAGVALTTMVLPLVGLAIATTLRGLPAL 202
            T K+++W GIA +AAL +GAP+G+ + +  GFA + L+ M+L  +G  +A   RG P  
Sbjct: 160 NTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAMIGLSGMLLTALGYVLA---RGGPVT 216

Query: 203 GN-KGGGVAMSEVLRLIWRFGMALALSAMPFAIITSFLVLLYASNNWSGAGIAILGFSVG 261
              +G  ++   VLR ++ +GM LA   + F  I +F+ L YA  +WSGA  A+  FS  
Sbjct: 217 PVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFITLYYADLHWSGAAFALTAFSSA 276

Query: 262 YVGVRLFFAHLPDRIGGAKVGAVSVAIELVGQLLLWQSHDPLMAGLGTLLTGIGFSLVFP 321
           +VG RL FA+   R GG +V  VS   E VG LLLW +  P +A LG  L G GF+LVFP
Sbjct: 277 FVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLLWSTTTPELALLGAGLAGFGFALVFP 336

Query: 322 SMGVQAMARVPAHSRGLAVATFMAFIDLAAGLTGPVVGVLIGYFGYGSAFL 372
           S+GV+A+  V   +RG A+A +  F+DLA G+TGP+ G + G  GY   FL
Sbjct: 337 SLGVEAVNLVSPANRGAALAAYSVFLDLALGITGPLAGAIAGQLGYPQVFL 387


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,144,767
Number of extensions: 48025
Number of successful extensions: 363
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)