BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0135.p (250 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311145|ref|YP_003775237.1| transcription regulator protein... 295 2e-81 gi|300312835|ref|YP_003776927.1| LysR family transcription regul... 85 5e-18 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 66 2e-12 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 63 2e-11 gi|300309859|ref|YP_003773951.1| LysR family transcription regul... 62 5e-11 >gi|300311145|ref|YP_003775237.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 295 bits (755), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 160/278 (57%), Positives = 198/278 (71%), Gaps = 36/278 (12%) Query: 5 QRPLDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEERLGRRLLERTPRQVRL 64 ++PLDLDAVQAFVL AD+ SFTRAAEAL +TQSA+SLKLK+LE+RLGRRLLERTPRQVRL Sbjct: 2 EKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAVSLKLKKLEQRLGRRLLERTPRQVRL 61 Query: 65 SADGIGFLDAARNLLTAHEKALGRMETSTVRLSLGIS----------------------- 101 SA+G FL AAR LL AHE+AL +++ VR S+GIS Sbjct: 62 SAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVV 121 Query: 102 -------------XYDRGELEAVIVRRDGERSDGELIQEERMGWFAAPQWQPRAGEPLRL 148 Y+RGEL+AVIVRR+ + G+L+ EER+GWFA P Q AG LR+ Sbjct: 122 VEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRV 181 Query: 149 ATFSPSCGIRELAVRRLEDAGIPWIEVFVGGGVHAVAAAVTAGLAVTALLYRVKPAGAID 208 ATFS +C IREL++RRL+ AGI W+EVFVGGG+ AV AAV+AGLAV+ALLYR P GA+D Sbjct: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAPPGAVD 241 Query: 209 VGKSMKLPSLPLAQVMLHTSVRDTRAQGVLRTVVAAMK 246 VG+ + LP LPLAQV LH+ +++ R QG LR +VAA+K Sbjct: 242 VGERLGLPRLPLAQVRLHSRLKEARLQGALRGLVAALK 279 >gi|300312835|ref|YP_003776927.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 85.1 bits (209), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 119/267 (44%), Gaps = 44/267 (16%) Query: 8 LDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEERLGRRLLERTPRQVRLSAD 67 LDLD + V VAD +F+RAAE ++ TQSA+S+++K LE LG+ L R PR V + D Sbjct: 4 LDLDVLAMIVAVADTGNFSRAAELVHRTQSAVSMQIKTLELALGKPLFLRKPRSVVPTQD 63 Query: 68 GIGFLDAARNLLTAHEKALGRMETSTV--RLSLGI-----------------SXYDRGEL 108 G L AR +LT ++A + V R+ +G+ + Y + E+ Sbjct: 64 GEVLLTYARRMLTLRDEAWAAVVRPDVTGRVVIGVPDDYASSLLPSILKKFSATYPKVEI 123 Query: 109 EAV--------IVRRDGERS----------DGELIQEERMGWFAAPQ----WQPRAGEPL 146 + V + +DG GE I+ E M W P W+ R PL Sbjct: 124 QVVGLPSSALAPMVKDGTVDLVCATRVKGISGEFIRFEPMVWATVPSASDLWRER---PL 180 Query: 147 RLATFSPSCGIRELAVRRLEDAGIPWIEVFVGGGVHAVAAAVTAGLAVTALLYRVKPAGA 206 +A F P RE A+R LE A I + + + + + V AGLA+ L P Sbjct: 181 PIAVFLPGSVARENAIRSLEKARIGYRTSYESPSLMGLLSMVEAGLAIAPLARCAVPPHF 240 Query: 207 IDVGKSMKLPSLPLAQVMLHTSVRDTR 233 + + LP + +V+L S + R Sbjct: 241 TLLDHAHGLPDIAPLEVVLARSTKSKR 267 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/72 (50%), Positives = 50/72 (69%) Query: 8 LDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEERLGRRLLERTPRQVRLSAD 67 +D+ VQAFV +AD SF AA AL+ TQ+A++L+L++LE+ LG L+ERT R + L+ Sbjct: 3 IDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTEI 62 Query: 68 GIGFLDAARNLL 79 G FL AR LL Sbjct: 63 GRDFLPQARRLL 74 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 53/212 (25%) Query: 7 PLDLDAVQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEERLGRRLLERTPRQVRLSA 66 P+ L +++ F A++ SFT AAEAL T +++S + RLE RLG RL RT RQ+RL+ Sbjct: 6 PVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTR 65 Query: 67 DGIGFLDA----------ARNLLTAHEKALGRMETSTVRLSLGI---------------S 101 +G + D A +LT +K + + +R+S+G Sbjct: 66 EGELYRDQCQQALEQIADAERILTGQQK----VPSGLLRISVGTPYAHYRLLPLLPRFQQ 121 Query: 102 XYDRGELEAVIVRRD--------------GERSDGELI----QEERMGWFAAPQWQPRAG 143 Y + E+E I R G D LI +E +G FAAP + R G Sbjct: 122 AYPQIEVELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARRG 181 Query: 144 EPLRLATFSPSCGIRELAVRRLEDAG--IPWI 173 +P +A I+ + L +G +PWI Sbjct: 182 QPRSIAELEQHDCIQFI----LPSSGRAMPWI 209 >gi|300309859|ref|YP_003773951.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 105/272 (38%), Gaps = 38/272 (13%) Query: 13 VQAFVLVADMQSFTRAAEALYTTQSAISLKLKRLEERLGRRLLERTPRQVRLSADGIGFL 72 +Q F A SFT A L TQS +S ++RLEE LGRRL R + L+ADG L Sbjct: 22 LQTFSTAASSASFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTADGESLL 81 Query: 73 DAARNLLTAHEKALGRMETSTVR---------------------------------LSLG 99 AR +L AH +A + +R +++G Sbjct: 82 VHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVELEITIG 141 Query: 100 IS-----XYDRGELEAVIVRRDGERSDGELIQEERMGWFAAPQWQPRAGEPLRLATFSPS 154 ++ D+G+L+ ++ +R S G + M W P EPL L Sbjct: 142 LTSDLYASLDQGKLDLLVGKRRSGESRGHSMFSTPMQWLTRPDTLVDLAEPLPLILLPEP 201 Query: 155 CGIRELAVRRLEDAGIPWIEVFVGGGVHAVAAAVTAGLAVTALLYRVKPAGAIDVGKSMK 214 R ++ L +G W V G AA GL + AL + + Sbjct: 202 SITRAATLQALGKSGHHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVPPLNHAA 261 Query: 215 LPSLPLAQVMLHTSVRDTRAQGVLRTVVAAMK 246 LP+LP + + T+ R +R L ++ A + Sbjct: 262 LPALPDVEYVALTARRLSRPADTLYQILMASR 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 633,396 Number of extensions: 21766 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 12 Length of query: 250 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 167 Effective length of database: 1,226,865 Effective search space: 204886455 Effective search space used: 204886455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)