BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0133.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311143|ref|YP_003775235.1| Zn-dependent hydrolase [Herbasp...   499   e-142

>gi|300311143|ref|YP_003775235.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  499 bits (1284), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/353 (66%), Positives = 278/353 (78%), Gaps = 10/353 (2%)

Query: 20  VVALVSAGCAAASKYYDPEKPNRTPSGFRNTAPQEPRASLLKWQWERLTQGLPKAPANNY 79
           ++A     C+++ KY DP K NRT SGFRN   Q  R S  KWQWERLTQGLPK P N+Y
Sbjct: 1   MLATSLGACSSSGKYADPSKSNRTDSGFRNNYAQPERGSFWKWQWERLTQGLPKPPENHY 60

Query: 80  KFPMATPEIAWLQANQSVASVTWISHATALLQISGMNVITDPIFSGRASPFSFVGPLRKV 139
           +FP+  P++AWL+ N    SVTWI HATAL+Q+ G NV+TDP+FS RASPFSF+GP RKV
Sbjct: 61  QFPVLKPDLAWLKDNDRHPSVTWIGHATALVQLGGKNVLTDPMFSQRASPFSFIGPARKV 120

Query: 140 PLNITPEQLPHIDVVVISHNHYDHLDQASVEQLNRQPGGPPLFLVPLGVKEWMAGVGITN 199
           PL +   +LPHIDVVVISHNHYDHLD+ASVEQLN QPGGPPLFLVPLG+++W   +GITN
Sbjct: 121 PLPVQISELPHIDVVVISHNHYDHLDRASVEQLNLQPGGPPLFLVPLGLRDWFQALGITN 180

Query: 200 VREMDWWDKTSAGKLDISFVPAQHWSARSLTDRSETLWGGWVIKTADGAPH--------- 250
           V+EMDWWDKTS  +LDI FVPA HWSAR L DRSETLWGGWV++  D             
Sbjct: 181 VQEMDWWDKTSLDQLDIHFVPATHWSARGLFDRSETLWGGWVLQAMDCPGKADTTRQSPV 240

Query: 251 -PFSVFFAGDTGYSKDFQDIGRKFGSFDFALIPIGAYAPRWFMQGQHVDPEQAVQIHKDV 309
            PFSV+FAGDTGYS+DF+DIG +FG FD ALIPIGAYAPRWFMQ QHVDP QAV IH+DV
Sbjct: 241 APFSVYFAGDTGYSQDFRDIGERFGHFDLALIPIGAYAPRWFMQNQHVDPAQAVLIHQDV 300

Query: 310 HAKRSIGIHWGTFELADEPLDEPPQLLAEAVKKAGLPAQEFTVLKHGETVKLD 362
           HA+RS+ IHWGTFELAD+ LDEPP+ LA+A++ AGLP ++F  LKHGET+KLD
Sbjct: 301 HARRSVAIHWGTFELADDALDEPPKELAKAMQAAGLPQEQFVTLKHGETLKLD 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,238,487
Number of extensions: 53247
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)