BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0132.p (259 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 420 e-119 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 105 3e-24 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 105 3e-24 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 95 5e-21 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 84 8e-18 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 420 bits (1079), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/231 (87%), Positives = 213/231 (92%), Gaps = 1/231 (0%) Query: 30 GARLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALSYRNDPLPKMLNM 89 GAR+LYSLPNFQNPTGRTLP ERRF LVE CARLGLPLIEDDPYGALSY+N PLPKML+M Sbjct: 168 GARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSM 227 Query: 90 NPAGVIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHTAQLTQMVVYEAIKDG 149 NP+GVIYMGSFSKVLTPGIRLGYVVAP PLILKMEQAKQA DLHTAQLTQMVVYEAIKDG Sbjct: 228 NPSGVIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDG 287 Query: 150 FLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTRPEGGMFIWVTLPAHIDSGALLKEA 209 FL H+PTIRKLY DQCQAMLDALQ YFPA SW++PEGGMFIWVTLP HID+GALL EA Sbjct: 288 FLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEA 347 Query: 210 VEQH-VAFVPGAPFYANEPQQNTLRLSFVTVPPEKIRAGIERLGKLIAAKL 259 VEQ VAFVPGAPFYAN Q+NTLRLSFVTVPPE+IRAG+ERLGKLIA+KL Sbjct: 348 VEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIASKL 398 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 105 bits (263), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 8/223 (3%) Query: 37 LPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALSYRNDPLPKMLNMNPAG-VI 95 +PN QNP G +P + + LV C +L LPLIEDD Y L+ + + + + G VI Sbjct: 292 VPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVI 351 Query: 96 YMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHT---AQLTQMVVYEAIKDGFLQ 152 Y S +KVL PG+RLG++ E+ K HT + TQ+ + I Sbjct: 352 YCASLNKVLAPGMRLGWMNGGR----WHERVKMLKFTHTRANEEWTQVTAADFIASPAYD 407 Query: 153 THIPTIRKLYADQCQAMLDALQTYFPAGTSWTRPEGGMFIWVTLPAHIDSGALLKEAVEQ 212 H+ +R++ Q + M +++ YFP GT P GG+ +WV LP + S L + A+ + Sbjct: 408 RHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAE 467 Query: 213 HVAFVPGAPFYANEPQQNTLRLSFVTVPPEKIRAGIERLGKLI 255 V PGA F + + +R+ ++ + RLG L+ Sbjct: 468 GVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLGGLV 510 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 4/241 (1%) Query: 16 DVIDVCTRCRTSRXGARLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGA 75 DV + R +T A ++ +PNFQNP G +P + LV + +P+IE+ Y Sbjct: 238 DVGALEERMKTQAIAACMV--MPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSE 295 Query: 76 LSYRNDPLPKMLNMNPAG-VIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHT 134 L Y N + N + G V++ SFSK LT R+G+ + P ++E+ K L T Sbjct: 296 LYYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAM-PGRYRAQVEKLKFLNTLAT 354 Query: 135 AQLTQMVVYEAIKDGFLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTRPEGGMFIWV 194 Q + E + G + H+ +R+ +A Q M + +FPAGT + P+GG +WV Sbjct: 355 PTAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWV 414 Query: 195 TLPAHIDSGALLKEAVEQHVAFVPGAPFYANEPQQNTLRLSFVTVPPEKIRAGIERLGKL 254 LP +D+ L + ++ + PG F A + +RL++ ++ ++ +GKL Sbjct: 415 ELPQGVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVGKL 474 Query: 255 I 255 + Sbjct: 475 V 475 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 2/230 (0%) Query: 32 RLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDDPYGALSYRNDPLPKMLNMNP 91 R + + P+ Q P G + L RR L+E A + +IEDD Y PL + M+ Sbjct: 286 RFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGMDT 345 Query: 92 AG-VIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAADLHTAQLTQMVVYEAIKDGF 150 V+YMG+FSK++ PG+R+G++V P L + Q + + + +G Sbjct: 346 QDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYRNGQVFLQATLADFMAEGH 405 Query: 151 LQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTRPEGGMFIWVTLPAHIDSGALLKEAV 210 +HI +R LYA++ Q + ++ +F + T E G+ + + LP D + ++A+ Sbjct: 406 FASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQAL 465 Query: 211 EQHVAFVPGAPFYAN-EPQQNTLRLSFVTVPPEKIRAGIERLGKLIAAKL 259 + P + +Y + + L L + +VP ++I ++L +I L Sbjct: 466 AAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVIKPHL 515 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 84.3 bits (207), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 10/232 (4%) Query: 12 GEFADVIDVCTRCRTSRXGARLLYSLPNFQNPTGRTLPLERRFALVEACARLGLPLIEDD 71 G DV++ R + + ++ QNPTG + +++A R G ++EDD Sbjct: 239 GVDTDVLETLARTHHPK----MFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDD 294 Query: 72 PYGALSYRNDPLPKMLNMNPAGVIYMGSFSKVLTPGIRLGYVVAPTPLILKMEQAKQAAD 131 + L DP+ L+ VIY+GS+SK + P +R+GY+ L ++ K Sbjct: 295 IFRELGQATDPMLAALD-GLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLT 353 Query: 132 LHTAQLTQMVVYEAIKDGFLQTHIPTIRKLYADQCQAMLDALQTYFPAGTSWTRPEGGMF 191 L +++ + +V+ + +G + H+ T+ QA L+A + T +T GGMF Sbjct: 354 LTNSEINERLVHNVLTEGHHRRHVQTLNATLLS-AQATLNAKLSEVGL-TPFTAARGGMF 411 Query: 192 IWVTLPA-HIDSGALLKEAVEQHVAFVPGAPFYANEPQQNTLRLS--FVTVP 240 W T+ + + + A ++ + PG F+ + P Q + R + + VP Sbjct: 412 SWATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVP 463 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 873,657 Number of extensions: 38672 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 9 Length of query: 259 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 176 Effective length of database: 1,226,865 Effective search space: 215928240 Effective search space used: 215928240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)