BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0131.p
         (78 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   134   2e-33
gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   108   6e-26

>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  134 bits (336), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 68/77 (88%)

Query: 1   MQLTERGASANHTDVVSLDADMLGVETVGNDYLASVKFFGFIKEDQNASPTQFNEIWNLS 60
           +Q+ ERGA++N TDVVSLDA++LGVETVGNDYLASVKFFGFIKED  ASP QF EIWNLS
Sbjct: 161 LQIQERGAASNQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIWNLS 220

Query: 61  KPVTGNGGWVLAGIQQL 77
           KP  G GGWVLAGIQQ+
Sbjct: 221 KPAAGQGGWVLAGIQQI 237


>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  108 bits (271), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 61/77 (79%)

Query: 1   MQLTERGASANHTDVVSLDADMLGVETVGNDYLASVKFFGFIKEDQNASPTQFNEIWNLS 60
           MQLTERGA+ N TDVV LDA +LG+ET+  DYLA+V+F G IKE  + S   F EIWNLS
Sbjct: 241 MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIWNLS 300

Query: 61  KPVTGNGGWVLAGIQQL 77
           KP+ G+GGWVLAGIQQ+
Sbjct: 301 KPLNGSGGWVLAGIQQV 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 250,612
Number of extensions: 8397
Number of successful extensions: 9
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 1,619,870
Length adjustment: 49
Effective length of query: 29
Effective length of database: 1,387,855
Effective search space: 40247795
Effective search space used: 40247795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)