BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0128.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311139|ref|YP_003775231.1| MocR family transcription regul...   174   3e-45
gi|300310416|ref|YP_003774508.1| MocR family transcription regul...    54   3e-09

>gi|300311139|ref|YP_003775231.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  174 bits (441), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 97/115 (84%)

Query: 1   MKAAFDTVLTNQGKIALQYGPTDGYGPLREWVANSLSTDGARILPEQVLMVSGSQQGLDL 60
           MK AFD VL+ QGK+ALQYGPTDGY PLREW+A SLST+GA+I  EQVLMVSGSQQGLDL
Sbjct: 55  MKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSTNGAQISAEQVLMVSGSQQGLDL 114

Query: 61  LGKVLIDEGSNVMVETPSYLGALQAFSIYGPNFISVPSDEQGLIPSAVEELGKGA 115
           LGKVLIDEGS V+VETPSYLGALQAF++YG  F SVPSDE GL P  +E +  GA
Sbjct: 115 LGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDEFGLQPETIEAIAGGA 169


>gi|300310416|ref|YP_003774508.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 54.3 bits (129), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 17  LQYGPTDGYGPLREWVANSLST-DGARILPEQVLMVSGSQQGLDLLGKVLIDEGSNVMVE 75
           L YGP  GY  LRE +A  L         P QVL+ +G  Q LD++ K+L + G +  VE
Sbjct: 187 LTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVE 246

Query: 76  TPSYLGALQAFSIYGPNFISVPSDEQGL 103
            P Y G     +  G   + +  D++G+
Sbjct: 247 DPCYWGTRSVLNSLGIQSVPIAVDQEGM 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 548,730
Number of extensions: 24333
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)