BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0125.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311137|ref|YP_003775229.1| drug/metabolite transporter (DM...   442   e-125

>gi|300311137|ref|YP_003775229.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  442 bits (1138), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/288 (77%), Positives = 257/288 (89%)

Query: 2   NSESKGMWLGFIGVAIFSLTLPFTRVAVAELNPAFVAFGRAVVAAVCAIGMLWHLKAKLP 61
            +ES+GMWLG IGVA+FSLTLPFTR+AVAEL+PAFVAFGRAVVA +C++ +L  ++A  P
Sbjct: 19  RNESRGMWLGLIGVAVFSLTLPFTRIAVAELSPAFVAFGRAVVAGLCSLALLAWMRAPRP 78

Query: 62  TRLQVRGLLITSLGVVVGFPLFSSIAMHYVPASHGAVVVGLLPLATALFGALRFGERPST 121
              Q+RGL+IT+LGVVVGFPLFSSIAM YVPA+HGAVVVGLLPLATALFGALRFGERPS 
Sbjct: 79  NAQQLRGLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPSA 138

Query: 122 GFWIAALIGSFIVIAFALRQGGGSFHTADFALFAAVVAAAMGYAEGGRLSQSMGGQQVIC 181
           GFW++AL GS IVIAFALR GGGSFH ADFALFAAV+ AAMGYAEGGRL+QSMGGQ VI 
Sbjct: 139 GFWLSALAGSAIVIAFALRAGGGSFHAADFALFAAVITAAMGYAEGGRLAQSMGGQNVIA 198

Query: 182 WALVLSMPVLLPVTIWLGMHYGVAASPQAWMSFAYVSFFSMFIGFFFWYKGLALGGIARV 241
           WALV+++PV+LPV++WLG   G++AS  AW++F YVS FSMFIGFFFWYKGLALGGIARV
Sbjct: 199 WALVVALPVMLPVSLWLGWQDGLSASAPAWLAFGYVSLFSMFIGFFFWYKGLALGGIARV 258

Query: 242 GQVQLLQPFMTLVGAAVIVGETLDASHLLFATAVIAVVAIGRRMAIRR 289
           GQVQLLQPFM+L+GAAVI GE LDAS++LFA AVI VVAIGRRMA+RR
Sbjct: 259 GQVQLLQPFMSLLGAAVIAGEALDASNMLFALAVIVVVAIGRRMAVRR 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 911,799
Number of extensions: 37654
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)