BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0124.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311136|ref|YP_003775228.1| threonine efflux protein [Herba...   220   8e-59
gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    55   4e-09

>gi|300311136|ref|YP_003775228.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  220 bits (560), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 130/163 (79%), Gaps = 2/163 (1%)

Query: 1   MEALLPLASFAFVTSITPGPNNIMLTSSGVWFGFLRSIPHMLGITFGFMVLLAICAAGIG 60
           +E LLPL SFAFV+SITPGPNNIMLTSSG+WFGF RS+PHMLGITFGF VLLA+CA GIG
Sbjct: 2   IETLLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHMLGITFGFGVLLALCAFGIG 61

Query: 61  SLVIAVPAIHVLLKIAGSGYLLYLAWKLRSMRFSQEDSAHVRPMSFMGAALFQFANPKAW 120
            LVIAVP + +LLK  G  YLLYLAW+LR M  +       +PMSF  AALFQFANPKAW
Sbjct: 62  ELVIAVPQLVLLLKAMGCAYLLYLAWQLRRMGVAGAGERAAQPMSFGAAALFQFANPKAW 121

Query: 121 VMAITGAAAFLPLVQ--PVWLAIAIYCLVFGVINLPCVGVWAG 161
           VMA+TGA+AF+P++   P  LAI +YCLVF  INLPCV VWAG
Sbjct: 122 VMAVTGASAFMPMLHKLPGALAILVYCLVFCAINLPCVSVWAG 164


>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 55.5 bits (132), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 15/158 (9%)

Query: 11  AFVTSITPGPNNIMLTSSGVWFGFLRSIPHMLGITFGFMVLLAICAAGIGSLVIAVPAIH 70
           A V +I+PG   ++  S G+ +G  R+   +LG+    +V+L I  AG+GSL++A     
Sbjct: 13  ACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLVASETAF 72

Query: 71  VLLKIAGSGYLLYLAWKLRSMRFSQEDSAHVRPMSF---------------MGAALFQFA 115
            ++K+AG+ YL+YL +     R   E+       +                M   L    
Sbjct: 73  NVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTGFLTNAT 132

Query: 116 NPKAWVMAITGAAAFLPLVQPVWLAIAIYCLVFGVINL 153
           NPK  V  +     F+   +P+WL + +  +    ++L
Sbjct: 133 NPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDL 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 667,658
Number of extensions: 26478
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)