BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0117.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A...   165   1e-42
gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte...   100   7e-23
gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte...    87   8e-19
gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A...    72   3e-14

>gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  165 bits (418), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 97/127 (76%), Gaps = 8/127 (6%)

Query: 22  FSIMTTQLQRRRLLQAIATMTSAAAAGSLALPA--FAQTGKPVQARIGYQKSSTLLTVLK 79
            S  +T   RRRLL A     +A   GS   PA  FAQ  K +  RIGYQKSSTLLT+LK
Sbjct: 1   MSKHSTDSTRRRLLHA----ATALGLGSALAPASVFAQGNKAI--RIGYQKSSTLLTILK 54

Query: 80  TNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYV 139
            NGTLEKLLAP   KISWHEF+SGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKL YV
Sbjct: 55  ANGTLEKLLAPTGAKISWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLAYV 114

Query: 140 AQEAPSP 146
           AQE+PSP
Sbjct: 115 AQESPSP 121


>gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  100 bits (248), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 14/127 (11%)

Query: 26  TTQLQRRRLLQAIATMTSAAAAGSLALPAFAQTGKPVQA------RIGYQKSSTLLTVLK 79
           T    RRR +Q +    SA A G+L +   A    PVQA      RIGYQK++  L +LK
Sbjct: 8   TVHQARRRAIQRL----SAIALGALTI---ALGASPVQAQETKLLRIGYQKAANTLVLLK 60

Query: 80  TNGTLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYV 139
            +GTLEK L PL V++ W EF++G  LLEALNVG VD    V +  PVFAQAAGA   Y 
Sbjct: 61  AHGTLEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGY-VGEAPPVFAQAAGADFVYT 119

Query: 140 AQEAPSP 146
           A E P+P
Sbjct: 120 AYEIPTP 126


>gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 86.7 bits (213), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 31  RRRLLQAIATMTSAAAAGSLALPAFAQTGKPVQARIGYQKSSTLLTVLKTNGTLEKLLAP 90
           RRR L A A    AAAA   +LPA+     P Q R+GYQK +  L++++ +G LE+ LAP
Sbjct: 20  RRRRLIAGAVTLGAAAAAGASLPAWVHAAAPRQLRVGYQKGA--LSLIRAHGVLEQRLAP 77

Query: 91  LNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYVAQEAPSP 146
           L   + W EFS+G   LEAL  G +D   DV +  P+FAQAAG  L YV    P P
Sbjct: 78  LGATVKWVEFSAGPVQLEALGAGSIDFG-DVGEAPPIFAQAAGTPLVYVGATVPRP 132


>gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 323

 Score = 71.6 bits (174), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 22/124 (17%)

Query: 30  QRRRLLQAIATMTSAAAAGSLALPAFAQTGKP-VQA------RIGYQKSSTLLTVLKTNG 82
           +RR LLQ +A       AG+LA      +G P V+A      RIGYQK +TL  +LK +G
Sbjct: 9   KRRLLLQGLA-------AGALA------SGTPLVRAAADKVLRIGYQKFNTL-NILKGSG 54

Query: 83  TLEKLLAPLNVKISWHEFSSGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLTYVAQE 142
            LE+ L P    + W EF++G  L EALN   +DL    ADT  VFA A+G    Y+  E
Sbjct: 55  KLEQALQPQGWSVKWFEFAAGPQLTEALNANAIDL-GHAADTPSVFANASGVNAVYLGAE 113

Query: 143 APSP 146
            P P
Sbjct: 114 QPYP 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 363,339
Number of extensions: 11557
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)