BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0116.p (290 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 319 2e-88 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 179 3e-46 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 122 4e-29 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 105 3e-24 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 104 7e-24 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 319 bits (817), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 175/241 (72%), Positives = 209/241 (86%), Gaps = 1/241 (0%) Query: 44 GALLPVAFLGALEIGSAFDLIPSRLLPPPSEIAQTIYALAKR-DLFAHIAVSVARVAAGF 102 G ++P+AFL +E G+ +LIP+RLLPPPSE+A T+++LA+R +L HIA S+ARVAAGF Sbjct: 28 GWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGF 87 Query: 103 SIGALLAVAFGVLVGMHRRAESLLEPSFQALRAIPSLAWIPLLLLWLGIDETPKIVLIAI 162 IG+ LAVA G+LVG+ RRAE+LLEPSFQALRAIPSLAWIPLLLLWLGIDETPK+VLIAI Sbjct: 88 VIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAI 147 Query: 163 GAFFPVYINLVAGIHNVDRKLLEVGKIHGLSSRDLIRRILLPAALPNLFTGLRTGLSLSW 222 GAFFPVY+NLVAGI ++D KL+EVG GL+++ LI ILLPA+LP LF GLR GLSL+W Sbjct: 148 GAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAW 207 Query: 223 MFLVAAELIAATKGVGYLLSDGRESSRPDIVLAAIIILATLGKLSDSLLKHIETRKLRWR 282 MFLVAAELIAATKGVGYLLSDGRESSRPD+VLAAI+ILA LGKLSD LL+ +E + L WR Sbjct: 208 MFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGWR 267 Query: 283 D 283 + Sbjct: 268 E 268 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 148/227 (65%), Gaps = 1/227 (0%) Query: 56 EIGSAFDLIPSRLLPPPSEIAQTIYAL-AKRDLFAHIAVSVARVAAGFSIGALLAVAFGV 114 E+ + + SR+LP P + + + L A +L+ H+AVS R A+GF++GA L + G+ Sbjct: 48 EVAAQAGWLSSRILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGL 107 Query: 115 LVGMHRRAESLLEPSFQALRAIPSLAWIPLLLLWLGIDETPKIVLIAIGAFFPVYINLVA 174 L G R AE LL+ + Q +R IP+LA IPL++LW GIDET K+ L+++G FFPVY+N Sbjct: 108 LSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFH 167 Query: 175 GIHNVDRKLLEVGKIHGLSSRDLIRRILLPAALPNLFTGLRTGLSLSWMFLVAAELIAAT 234 GI +VD+ L+E+ K +GLS L R ++LP ALP + GLR L L W+ L+ AE I+A Sbjct: 168 GIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQ 227 Query: 235 KGVGYLLSDGRESSRPDIVLAAIIILATLGKLSDSLLKHIETRKLRW 281 G+GY+ + RE + D+VL I++ A LGKL+D+ + +E LRW Sbjct: 228 AGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWLRW 274 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 122 bits (305), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 114/188 (60%) Query: 94 SVARVAAGFSIGALLAVAFGVLVGMHRRAESLLEPSFQALRAIPSLAWIPLLLLWLGIDE 153 S+ RV AGF IGA LA+ G+L+G +R L+ + Q +R IP +A+IPL +LW G+ Sbjct: 80 SLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGN 139 Query: 154 TPKIVLIAIGAFFPVYINLVAGIHNVDRKLLEVGKIHGLSSRDLIRRILLPAALPNLFTG 213 P + LI++GAFFPV +N +AG+ VD L + G S L R++LPAA+P + +G Sbjct: 140 PPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSG 199 Query: 214 LRTGLSLSWMFLVAAELIAATKGVGYLLSDGRESSRPDIVLAAIIILATLGKLSDSLLKH 273 +R G+ +++ ++ AE+IA + G+G+ + + RE D ++A +I + LG D + Sbjct: 200 VRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGMSR 259 Query: 274 IETRKLRW 281 + LRW Sbjct: 260 LNNYMLRW 267 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 105 bits (263), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 64 IPSRLLPPPSEI---AQTIY--ALAKRDLFAHIAVSVARVAAGFSIGALLAVAFGVLVGM 118 +P LP P+E+ AQ+I+ A L H+ S+ R+ I LL + G+L+G+ Sbjct: 67 VPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGL 126 Query: 119 HRRAESLLEPSFQALRAIPSLAWIPLLLLWLGIDETPKIVLIAIGAFFPVYINLVAGIHN 178 +R + +L+ + +P LA++PL+++WLGI E KI L+ + F PV ++ AG+ + Sbjct: 127 NRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRS 186 Query: 179 VDRKLLEVGKIHGLSSRDLIRRILLPAALPNLFTGLRTGLSLSWMFLVAAELIAATKGVG 238 + ++ + G + L+ ++LP+ALP + TG+R L + W LVAAELIA+ +G+G Sbjct: 187 LPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIASNRGIG 246 Query: 239 YLLSDGRESSRPDIVLAAIIILATLGKLSDSLLKHIETRKLRWR 282 Y++ D V I ++AT ++ +E + W+ Sbjct: 247 YMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWK 290 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 104 bits (260), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 49 VAFLGALEIGSAFDLIPSRLLPPPSEI--AQTIYALAKRDLFAHIAVSVARVAAGFSIGA 106 +A +G L + L S L P + A + ++ L + S R+ AG+ G Sbjct: 20 IAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGV 79 Query: 107 LLAVAFGVLVGMHRRAESLLEPSFQALRAIPSLAWIPLLLLWLGIDETPKIVLIAIGAFF 166 ++ V G+ +G LL+P + R IP +A++ L ++WLG E KI LI F Sbjct: 80 VIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVF 139 Query: 167 PVYINLVAGIHNVDRKLLEVGKIHGLSSRDLIRRILLPAALPNLFTGLRTGLSLSWMFLV 226 V +N +AG+ V+ L G ++ ++LP+ +P + TG R + S++ +V Sbjct: 140 IVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVV 199 Query: 227 AAELIAATKGVGYLLSDGRESSRPDIVLAAIIILATLGKLSDSLLKHIETRKL 279 +AE+++A +G+G L+ R SR + V II L LG L D +L+ + TRKL Sbjct: 200 SAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLR-VATRKL 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 773,373 Number of extensions: 28031 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 17 Length of query: 290 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 206 Effective length of database: 1,222,130 Effective search space: 251758780 Effective search space used: 251758780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)