BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0112.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309990|ref|YP_003774082.1| recombinase A protein [Herbaspi...   621   e-179

>gi|300309990|ref|YP_003774082.1| recombinase A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  621 bits (1602), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/348 (91%), Positives = 334/348 (95%)

Query: 1   MDDKKSANNTEKGKALAAALAQIEKQFGKGSVMRMEDGAVLEEIQVVSTGSLGLDIALGV 60
           MDDKK+ANN+EK KALAAALAQIEKQFGKGSVMRMEDG + EEIQ VSTGSLGLDIALG+
Sbjct: 1   MDDKKAANNSEKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGI 60

Query: 61  GGLPRGRVIEIYGPESSGKTTLTLQAIAEMQKIGGTCAFIDAEHALDVTYAQKLGVNLSD 120
           GGLPRGRVIEIYGPESSGKTTLTLQ+IAEMQK+GGTCAFIDAEHALDVTYAQKLGVNL+D
Sbjct: 61  GGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLND 120

Query: 121 LLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQ 180
           LLISQPDTGEQALEI DALVRSG VDLIV+DSVAALTP+AEIEGDMGDSLPGLQARLMSQ
Sbjct: 121 LLISQPDTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 180

Query: 181 ALRKLTGSINRTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS 240
           ALRKLTGSINRT+TTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
Sbjct: 181 ALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS 240

Query: 241 GDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSY 300
           GDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGS+ K+VEKSGAWYSY
Sbjct: 241 GDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSY 300

Query: 301 NGERIGQGKDNARNFLKERPELAREIENKVRASLGVPELAASGAGAAA 348
           NGERIGQGKDNARN+LKE PELAREIENKVR +LGVPELA   A A A
Sbjct: 301 NGERIGQGKDNARNYLKEHPELAREIENKVRVALGVPELAGGEAEAEA 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,858
Number of extensions: 45766
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)