BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0109.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309993|ref|YP_003774085.1| succinyl-CoA synthetase subunit...   380   e-107

>gi|300309993|ref|YP_003774085.1| succinyl-CoA synthetase subunit
           alpha [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/200 (95%), Positives = 197/200 (98%)

Query: 1   MSILINKDTKVITQGITGKTGQFHTRMCREYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60
           MSILINKDTKVITQGITGKTGQFHTRMCR+YANGKNAFVAGVNPKKAGEDFEGIPI+ANV
Sbjct: 1   MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60

Query: 61  SEAKKATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLELKNRMAKSGS 120
           +EAK ATGA VSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDML LK+RMAK+GS
Sbjct: 61  TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120

Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180
           KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA
Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180

Query: 181 VGIGGDPINGLKHIDIMKAF 200
           VGIGGDPINGLKHID+MKAF
Sbjct: 181 VGIGGDPINGLKHIDVMKAF 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 582,450
Number of extensions: 22972
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)