BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0105.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309996|ref|YP_003774088.1| molybdenum cofactor biosynthesi...   234   3e-63

>gi|300309996|ref|YP_003774088.1| molybdenum cofactor biosynthesis
           MoaC protein [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  234 bits (597), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 140/160 (87%), Gaps = 1/160 (0%)

Query: 6   TANSPADANQGLTHFDQGGQAHMVDVGAKHDTHRVAVASGVISMKPQTLAVIQSGTAKKG 65
           T  +PA AN GLTHFDQGGQAHMVDVG KH++HRVAVA+GVI M+P TLA+I+SGTAKKG
Sbjct: 3   TPGAPA-ANGGLTHFDQGGQAHMVDVGGKHESHRVAVATGVIRMQPATLAIIESGTAKKG 61

Query: 66  DVLGIARIAAIMASKRTSDLIPLCHPLALTHVSVEFAVDAGQSRISCTVRVETNGKTGVE 125
           DVLGIARIAAIMA+KRT DLIPLCHPLALTHVSV+F  DA  + + CT RVET GKTGVE
Sbjct: 62  DVLGIARIAAIMAAKRTGDLIPLCHPLALTHVSVDFETDAASASVRCTARVETFGKTGVE 121

Query: 126 MEALTAVQVGLLTIYDMSKAIDRGMVMSDIRVQEKHGGKS 165
           MEALTAVQ+GLLT+YDMSKA+D+ MVMSDI V +K GGKS
Sbjct: 122 MEALTAVQIGLLTVYDMSKAVDKTMVMSDICVTDKRGGKS 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 531,774
Number of extensions: 19998
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)