BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0103.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309998|ref|YP_003774090.1| hypothetical protein Hsero_0663...   222   2e-59

>gi|300309998|ref|YP_003774090.1| hypothetical protein Hsero_0663
           [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  222 bits (565), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 128/192 (66%), Gaps = 5/192 (2%)

Query: 9   MAKWPNVPHCFGWLKLDARGHWRMRDERAQHLDLPGDKIAHPALLGFINRNYTHDEEGRW 68
           MA+WPNVPHCFGWL+LDARG WRMRDERAQ LDLPGD I HPALL FI RNY  DE GRW
Sbjct: 1   MARWPNVPHCFGWLRLDARGGWRMRDERAQQLDLPGDPIRHPALLAFIERNYDSDETGRW 60

Query: 69  YFQNGPQRVYVDLELTPHIVRTDP----VAGFITQTGVTLEAVSQAWLTREGQLVLASSA 124
           YFQNGPQRVYVDLE  P I RT P        +  TG  L A+  AW+   G+L L +  
Sbjct: 61  YFQNGPQRVYVDLEWMPLIARTQPGLNEALQLVLHTGAALPALEAAWMDESGRLYLQAGG 120

Query: 125 IVAALDDRDAAAVLATLTVAGRPASDEEIMEWLEGSDKVALVFSQGGNELPLQRISADKL 184
               +DDRD A +L  L  AG+ A +  +M W+EG D V+L F      +PLQRI+A  L
Sbjct: 121 QFCGVDDRDLAQLLPCLQ-AGQRADEAALMAWMEGDDSVSLQFIHDAQAVPLQRIAAAAL 179

Query: 185 ARQFGFVTHPRA 196
           A +FGFV+ PRA
Sbjct: 180 ATRFGFVSLPRA 191


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,463
Number of extensions: 23095
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)