BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0085.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   308   2e-85
gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...   167   5e-43

>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
           reductase MsrA protein [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  308 bits (789), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/176 (80%), Positives = 158/176 (89%)

Query: 25  STETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEVVKLSF 84
           + E AVLGGGCFWCLEAVYQQ++GV+ VESGYTGG V NP+YEQVC G TGHAEVVKL+F
Sbjct: 8   AKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAF 67

Query: 85  DPALISFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAEMALVW 144
           DP  IS+RE+LE+FFTIHDPTTLNRQGNDVGTQYRSVIYY   AQ+DTA+HIIAEMALVW
Sbjct: 68  DPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALVW 127

Query: 145 DAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAKSRQE 200
           DAP+VTELSP + YY+AEDYHQNYF QHPFQGYCAFVVAPK+AK REVFA KS+ E
Sbjct: 128 DAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE 183


>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  167 bits (423), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 119/181 (65%), Gaps = 3/181 (1%)

Query: 23  STSTETAVLGGGCFWCLEAVYQQLKGVQHVESGYTGGHVKNPTYEQVCAGDTGHAEVVKL 82
           S  TET VL GGCFW ++ V+Q  +GV    SGY GG     TY  V +G TGHAE V++
Sbjct: 42  SAPTETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQV 101

Query: 83  SFDPALISFREILEVFFTI-HDPTTLNRQGNDVGTQYRSVIYYNSPAQYDTAKHIIAEM- 140
           ++DP  ISF ++L+++F++ HDPT LNRQG D GTQYRS I+  +  Q + A+  IA++ 
Sbjct: 102 TYDPRKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLN 161

Query: 141 -ALVWDAPLVTELSPVETYYKAEDYHQNYFQQHPFQGYCAFVVAPKLAKFREVFAAKSRQ 199
            A V+ AP+VT+++ ++ +Y AEDYHQ+Y   HP Q Y A+   PK+   ++++ A  R 
Sbjct: 162 AAKVYGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRA 221

Query: 200 E 200
           +
Sbjct: 222 D 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,496
Number of extensions: 24669
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)