BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0082.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309978|ref|YP_003774070.1| membrane transport protein [Her...   447   e-127

>gi|300309978|ref|YP_003774070.1| membrane transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 683

 Score =  447 bits (1149), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/285 (87%), Positives = 271/285 (95%)

Query: 1   MRYYTTPSVHEARKSVFWTLFFIMLIYITVPALAILVKYDIYTSLVGSNYAHLPDWVYYW 60
           MRYYTTP+V  AR SVFWTLFFIMLIY+TVPAL +LVKYDIYTSLVGS+Y+HLPDWVYYW
Sbjct: 399 MRYYTTPTVAGARTSVFWTLFFIMLIYLTVPALTVLVKYDIYTSLVGSSYSHLPDWVYYW 458

Query: 61  ANIDKVNPLVSITDLNHDNVVQLGEIALDGDIIVLATPEIAGLPYFISGLVAAGGLAAAL 120
           AN+DK+NPLVSITDLN D +VQLGEI++DGDIIVLA PEIAGLPYF+SGLVAAGGLAAAL
Sbjct: 459 ANMDKLNPLVSITDLNRDGLVQLGEISMDGDIIVLAMPEIAGLPYFVSGLVAAGGLAAAL 518

Query: 121 STADGLLLTISNALSHDVYYKVIDPAASTQKRVTISKLLLLVVALLAAYAASLKPGDILS 180
           STADGLLLTISNALSHDVYYKV+DP+ASTQKRVTISKLLLLVVALLAAYAASLKPGDILS
Sbjct: 519 STADGLLLTISNALSHDVYYKVVDPSASTQKRVTISKLLLLVVALLAAYAASLKPGDILS 578

Query: 181 MVGVAFSLAASTLFPALVFGIFWKRANQPGAIAGIVAGFVMCVYYMLTTHPAFGGNAANQ 240
           MVG AFSLAASTLFPALV G+FWKRANQ GAIAGI+ GF+MCVYYML T+P+FGG+AA Q
Sbjct: 579 MVGAAFSLAASTLFPALVLGVFWKRANQAGAIAGILCGFLMCVYYMLHTNPSFGGSAAGQ 638

Query: 241 WFHIAPISAGLFGVPVGIAALVIVSLLTPPPDERTIALIDHIRTP 285
           WFHIAPISAG+FGVPVG+AA+VIVSLLTPPPDE TIALIDHIRTP
Sbjct: 639 WFHIAPISAGIFGVPVGMAAMVIVSLLTPPPDEATIALIDHIRTP 683


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,793
Number of extensions: 30432
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)