BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0081.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310018|ref|YP_003774110.1| signal peptide protein [Herbasp...   234   7e-63
gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote...   149   2e-37

>gi|300310018|ref|YP_003774110.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  234 bits (596), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 107/135 (79%), Positives = 121/135 (89%), Gaps = 1/135 (0%)

Query: 22  DTYTIDPSHTYPSFEADHMGISVWRGKFTKTSGTVTLDRAAKTGSLDITIDASSVDFGHA 81
           DTY+IDPSHTYPSFEADHMG+S+WRGKF KTSGTVTLDRAAKTG++DITIDA+S+DFGHA
Sbjct: 23  DTYSIDPSHTYPSFEADHMGVSIWRGKFDKTSGTVTLDRAAKTGTVDITIDAASIDFGHA 82

Query: 82  KLNDHVKGPDVFDVQKFPTATYKGTSIKFEGDKPVAVDGELTLHGVTKPVQLKINKFTCI 141
           K+N+H K  D+FDV K+PTA YKG +IKF GDKP  V+GELTLHGVTKPV L +NKF CI
Sbjct: 83  KMNEHAKSADMFDVAKYPTAQYKG-NIKFNGDKPATVEGELTLHGVTKPVTLTLNKFNCI 141

Query: 142 QHPMLKREVCGADAS 156
           QHPMLKREVCG DAS
Sbjct: 142 QHPMLKREVCGGDAS 156


>gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  149 bits (376), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 81/100 (81%)

Query: 135 INKFTCIQHPMLKREVCGADASHAWVSVYCPGRDGQPGCWIDADPTNGIFPDISHITLGW 194
           ++ +   + P  +  + GADASHAWVSVYCPG +G  G WIDADPTNG+FPD SHITLGW
Sbjct: 211 VSGYLLTEPPPGQPRLIGADASHAWVSVYCPGVNGAEGSWIDADPTNGVFPDTSHITLGW 270

Query: 195 GRDFLDISPLRGVLIGGGQQTMQVAVTVMPSQEVPGLPFA 234
           GRDFLDISPLRGVLIGGGQQ+MQVAVTV+P++E  GL  +
Sbjct: 271 GRDFLDISPLRGVLIGGGQQSMQVAVTVLPAEEAQGLQLS 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 772,428
Number of extensions: 32829
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)