BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0079.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310020|ref|YP_003774112.1| cytochrome b561 protein [Herbas...   289   1e-79
gi|300311752|ref|YP_003775844.1| cytochrome b561 protein [Herbas...    84   1e-17

>gi|300310020|ref|YP_003774112.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  289 bits (740), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 153/174 (87%)

Query: 64  MERYTKPAVLLHWLIALLIIAAFALGLTMTNIPGLTPTKLKYFSWHKWLGVTVLGLACLR 123
           M+RYTKPA+LLHWLIALLII+AF LGLTM +IPGLTPTKLKYFSWHKWLGVTVL LAC R
Sbjct: 1   MDRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACAR 60

Query: 124 LLWRLTHAAPPYPVQMPRWQQSAAHALHFLLYILIFAIPVSGYLYSLAAGIPVVYLGVLP 183
           LLWRLTH AP YP  MP+WQQSAAH LH  LY L+FAIPVSGY YSLAAG+PVVYLGVLP
Sbjct: 61  LLWRLTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLP 120

Query: 184 LPVIIDPNPELKPLLKLVHYWLNMTLLAAFCLHVLAALKHQFIDRDGVLRRILP 237
           LPV++ PNPELKPLLK  HYWLNM LL AF LHVLAALKHQFIDRD + +RILP
Sbjct: 121 LPVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRILP 174


>gi|300311752|ref|YP_003775844.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score = 83.6 bits (205), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 98/185 (52%), Gaps = 6/185 (3%)

Query: 51  PLAVQPDTPPAIAMERYTKPAVLLHWLIALLIIAAFALGLTMTNIPGLTPTKLKYFSWHK 110
           P A     PP+    RY   +V+LHW+I LL + A A      +IP   P +    + H 
Sbjct: 3   PSATSSTFPPS----RYHPLSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHM 58

Query: 111 WLGVTVLGLACLRLLWRLTHAAPPYPVQMPRWQQSAAHALHFLLYILIFAIPVSGYLYSL 170
             G  VL L  LRLL R     PP  + +PR Q+  A A+H LLY ++  +PV+G L++ 
Sbjct: 59  HAGQLVLILVVLRLLARKAFGVPP-ELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQ 117

Query: 171 AAGIPVVYLGVLPLPVIIDPNPELKPLLKLVHYWLNMTLLAAFCLHVLAALKHQFIDRDG 230
           A G  VV+ G + LPVI+  +  L+  +K  H ++   +     LHVL AL HQF DR  
Sbjct: 118 AGGRDVVFFG-MTLPVILAKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMP 176

Query: 231 VLRRI 235
           +L+R+
Sbjct: 177 ILQRM 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 650,845
Number of extensions: 20781
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)