BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0078.p
         (455 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310021|ref|YP_003774113.1| adenylosuccinate lyase [Herbasp...   867   0.0  
gi|300310844|ref|YP_003774936.1| fumarate hydratase [Herbaspiril...    55   9e-09

>gi|300310021|ref|YP_003774113.1| adenylosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  867 bits (2240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/455 (92%), Positives = 439/455 (96%)

Query: 1   MSLSALSALSPLDGRYAAKTDKLRPILSEAGFMHHRVKVEIAWLQALSAAGFAEIKPFSA 60
           MSLSALSALSPLDGRYA+KTDKLRP+LSEAGFMHHRVKVEIAWLQALS AGFAEIKPFSA
Sbjct: 1   MSLSALSALSPLDGRYASKTDKLRPLLSEAGFMHHRVKVEIAWLQALSEAGFAEIKPFSA 60

Query: 61  SATALLDKLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC 120
           +A ALLDKLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC
Sbjct: 61  TALALLDKLAADFTEADAARIKEIEAVTNHDVKAVEYWLKEKVKDVPELVAASEFIHFAC 120

Query: 121 TSEDINNTSHGMMLKSARDTVVLPALQGLVAKLTELAHEHAAVPMMSRTHGQPASPTTLG 180
           TSEDINNTSHGMMLK+ARDTV+LP+LQ ++ KLTELAHEHAAVPM+SRTHGQPASPTTLG
Sbjct: 121 TSEDINNTSHGMMLKAARDTVLLPSLQAVITKLTELAHEHAAVPMLSRTHGQPASPTTLG 180

Query: 181 KEIANVVARLQRAVKRIAAVEILGKMNGAVGNYNAHLSAYPETDWAAFSKNVIEQRLGLV 240
           KE+ANVVARLQRA KRIAAVEILGKMNGAVGNYNAHLSAYP+TDWAAFSK V+EQRLGLV
Sbjct: 181 KEVANVVARLQRAAKRIAAVEILGKMNGAVGNYNAHLSAYPQTDWAAFSKQVVEQRLGLV 240

Query: 241 FNPYTIQIEPHDYMAELFDAVARANTILLDLNRDVWGYISLGYFKQRTKAGEIGSSTMPH 300
           FNPYTIQIEPHDYMAELFDAVAR NTILLDLNRD+WGYISLGYFKQRTKAGEIGSSTMPH
Sbjct: 241 FNPYTIQIEPHDYMAELFDAVARTNTILLDLNRDIWGYISLGYFKQRTKAGEIGSSTMPH 300

Query: 301 KVNPIDFENSEGNLGMANAVLKHLSEKLPVSRWQRDLTDSTVLRNIGVAFGYAVLAYDSC 360
           KVNPIDFENSEGNLGMANAVLKHL+EKLPVSRWQRDLTDSTVLRNIGV FGY +LAYDSC
Sbjct: 301 KVNPIDFENSEGNLGMANAVLKHLAEKLPVSRWQRDLTDSTVLRNIGVGFGYTLLAYDSC 360

Query: 361 LRGLNKLEVNPTRLAADLDNTWEVLAEPVQTVMRRYGIENPYEQLKELTRGKGISKDALR 420
           LRGLNKLEVNP RLA DLD TWEVLAEPVQTVMRRYGIENPYEQLKELTRGKGISKDALR
Sbjct: 361 LRGLNKLEVNPQRLADDLDATWEVLAEPVQTVMRRYGIENPYEQLKELTRGKGISKDALR 420

Query: 421 DFINGLAIPQNAKDHLLAMTPANYIGEAIALAKNI 455
           DFINGLAIPQ AKDHLLAMTPANYIG A+ LAK I
Sbjct: 421 DFINGLAIPQEAKDHLLAMTPANYIGTAVELAKQI 455


>gi|300310844|ref|YP_003774936.1| fumarate hydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 462

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 103 VKDVPELVAASEFIHFACTSEDINNTSHGMMLKSARDTVVLPALQGLVAKLTELAHEHAA 162
           V+    L+  ++ ++   +S DI  T+  +    A  T ++PAL  L   L E + + A 
Sbjct: 120 VRGEDRLIHPNDDVNRGQSSNDIFPTAMHVAACMAVATHLIPALHTLRGTLAEKSSQFAD 179

Query: 163 VPMMSRTHGQPASPTTLGKEIANVVARLQRA----VKRIAAVEILGKMNGAVGNYNAHLS 218
           +  + RTH Q A+P TLG+E +  VA+L+ A    +  + A+  L     AVG     L+
Sbjct: 180 IVKIGRTHLQDATPLTLGQEFSGYVAQLEHAESAVIGTLNAISELAAGGTAVGTG---LN 236

Query: 219 AYPETDWAAFSKNVIEQRLGLVFNPYTI------QIEPHDYMAELFDAVARANTILLDLN 272
           A+PE     F + V  +       P+         +  HD +      +      L+ + 
Sbjct: 237 AHPE-----FGERVAAELAKFFGFPFKTAPNKFAALAGHDALVASHGGLKTLAAALMKIA 291

Query: 273 RDVWGYISLGYFKQRTKAGEI-------GSSTMPHKVNPIDFE 308
            DV  +++ G    R+  GEI       GSS MP KVNP   E
Sbjct: 292 NDVR-WLASG---PRSGLGEITIPENEPGSSIMPGKVNPTQCE 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,357,849
Number of extensions: 54612
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,203,190
Effective search space: 441570730
Effective search space used: 441570730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)