BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0069.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310030|ref|YP_003774122.1| NTP pyrophosphohydrolase [Herba...   247   4e-67

>gi|300310030|ref|YP_003774122.1| NTP pyrophosphohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  247 bits (630), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 133/155 (85%)

Query: 1   MSEVWKPSVTVAAIIEREGRFLMIEEQAGDGLRLNQPAGHLDQGETLTQAVVREALEESA 60
           MSEVWKPSVTVAAIIER GRFLM+EE +  GLR+NQPAGHL+ GE+L  A VREALEESA
Sbjct: 1   MSEVWKPSVTVAAIIERGGRFLMVEEHSAGGLRINQPAGHLEPGESLVDAAVREALEESA 60

Query: 61  HDFEPTALVGMYMSRNVSSSRGGADTTYLRFAFAGTLGLQHDRPLDDGIVRTLWMARDEI 120
           H F PTALVG Y+SRNVSSSRGG   TYLRFAFAGT+G   +R LD+GI+R +WM R+E+
Sbjct: 61  HVFTPTALVGTYLSRNVSSSRGGLSATYLRFAFAGTVGEPLERALDEGILRAVWMTREEL 120

Query: 121 AACRERHRSPLVLRCVDDYLSGQRAPLSLLHTDPS 155
           AAC +RHRSPLVLRCVDDYL+GQRAPL L+HTDPS
Sbjct: 121 AACAQRHRSPLVLRCVDDYLAGQRAPLELVHTDPS 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,055
Number of extensions: 23959
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)