BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0068.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310031|ref|YP_003774123.1| NAD(P) transhydrogenase alpha s...   646   0.0  

>gi|300310031|ref|YP_003774123.1| NAD(P) transhydrogenase alpha
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/371 (90%), Positives = 354/371 (95%)

Query: 1   MRLGIPVESRDGETRVAATPETVKKLVAAKHEVLVESGAGTKSSITDEAYVAAGAVIAAA 60
           MR+GIP ESRDGETRVAATPETVKKLVAAKHEV+V+S AG KSSI DEA+VA GA I +A
Sbjct: 1   MRIGIPAESRDGETRVAATPETVKKLVAAKHEVMVQSAAGLKSSIPDEAFVAVGASIGSA 60

Query: 61  ADVYGAEALLKVRAPSADERARLKSGTVVVGILNPFDADNLAAMAAAGLTAFALEAAPRT 120
             V+ AE LLKVRAP   ERAR+K GTVV+G+LNPFDADN+AAMAAAGLTAFALEAAPRT
Sbjct: 61  DAVFTAEILLKVRAPDQAERARIKPGTVVIGMLNPFDADNIAAMAAAGLTAFALEAAPRT 120

Query: 121 TRAQSMDVLSSQANIAGYKAVLMAANTYQRFMPMLMTAAGTVKAARMLIMGAGVAGLQAI 180
           TRAQSMDVLSSQANIAGYKAVLMAANTYQRFMPMLMTAAGTVKAARMLIMGAGVAGLQAI
Sbjct: 121 TRAQSMDVLSSQANIAGYKAVLMAANTYQRFMPMLMTAAGTVKAARMLIMGAGVAGLQAI 180

Query: 181 ATAKRLGAVIEASDVRPAVKEQIESLGAKFLDVPFITDEEKEIAQGVGGYARPMPADWMR 240
           ATAKRLGAVIEASDVRPAVKEQIESLGAKFLDVPF+T+EEKEIAQGVGGYARPMP DWM+
Sbjct: 181 ATAKRLGAVIEASDVRPAVKEQIESLGAKFLDVPFLTEEEKEIAQGVGGYARPMPPDWMK 240

Query: 241 RQAELVHERAKQADIIITTALIPGRKAPVLISEETVKAMKPGSVILDMAVDQGGNCPLSE 300
           RQAELVHERAKQADIIITTALIPGRKAPVLISE+TVKAMKPGSVILDMAVDQGGNCPLSE
Sbjct: 241 RQAELVHERAKQADIIITTALIPGRKAPVLISEDTVKAMKPGSVILDMAVDQGGNCPLSE 300

Query: 301 PGKTVIKHGVHIIGEGNLAALVAADASALYSRNVLDFLKLIVDAEGKLVINREDDIVAAT 360
           PGKTVIKHGVHIIGEGNLAALVAADASALY+RNVLDFLKLI+DAEGKLVINREDDIVAAT
Sbjct: 301 PGKTVIKHGVHIIGEGNLAALVAADASALYARNVLDFLKLIIDAEGKLVINREDDIVAAT 360

Query: 361 LLCSGGEVLRK 371
           LLC GGE+LRK
Sbjct: 361 LLCQGGEILRK 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 942,756
Number of extensions: 33452
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)