BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0062.p (347 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hy... 404 e-114 gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hy... 78 1e-15 gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [He... 60 2e-10 >gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Herbaspirillum seropedicae SmR1] Length = 382 Score = 404 bits (1038), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/322 (62%), Positives = 238/322 (73%), Gaps = 1/322 (0%) Query: 13 DYDVIICGAGPVGLSAAALLHKRGMPAHRIALIDAKSSEQAAQDPRTIALSHGSQQILQE 72 D+D+IICG GPVG S A LL +R +PA RIAL+D KS EQAA DPRTIALS+GS+QIL E Sbjct: 5 DFDLIICGGGPVGQSVAGLLARRQLPAARIALVDMKSPEQAAADPRTIALSYGSRQILDE 64 Query: 73 IGTWSLMAPSVTSINQIHVSRRKHFGRTLINREDYALPALGYVVRYGALVTALSAALTKT 132 +G W + S T+I QIHVSRR HFGRTL++R+DY LPALGYV RYG + AL++A+ Sbjct: 65 LGAWDDIGRSATAIEQIHVSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALASAIAPL 124 Query: 133 NVAVLRPEQVSAIDEQGLQADVRLADGRTLSAGVVVQAEGGVFSEQTAKAVQRDYDQVAI 192 ++++RP + I+E+ V L DGR L A +V+QAEGGVF EQ K +QRDY Q+ I Sbjct: 125 GLSLMRPAEAQQIEEEDQHVAVTLKDGRILRAHLVIQAEGGVFGEQQHKTLQRDYQQLGI 184 Query: 193 VAHVTATAAIAHRAFERFTAQGPLALLPQDDGYALVWCVRPDTARRLLALDEKAFLHELG 252 +AHV A IAHRAFERFT +GPLALLPQDDGYALVWCVRP T +L+AL++ FL L Sbjct: 185 IAHVQADGVIAHRAFERFTDEGPLALLPQDDGYALVWCVRPATGEQLMALEDAGFLAALQ 244 Query: 253 EVFGGRVGRFASCSARHSYPLGLNAAPAASARTVAIGNAAQTLHPVAGQGLNLGLRDAAV 312 FG RVGRF S RH++PLGLNA P S R VAIGNAAQTLHPVAGQGLNLGLRDA V Sbjct: 245 RTFGERVGRFTRISPRHAFPLGLNARPGQSRRVVAIGNAAQTLHPVAGQGLNLGLRDARV 304 Query: 313 LASALTRTSSTPAALEQFAAQR 334 LA L R S P AL+ F QR Sbjct: 305 LADVLAREIS-PQALQAFERQR 325 >gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum seropedicae SmR1] Length = 410 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/326 (29%), Positives = 153/326 (46%), Gaps = 27/326 (8%) Query: 15 DVIICGAGPVGLSAAALLHKRGMPAHRIALIDAKSS----EQAAQDPRTIALSHGSQQIL 70 D+ I G G VG +AA L + G ++ L+ + A+ D R AL+H +Q++L Sbjct: 18 DICIVGDGAVGKTAALGLAQAGF---KVTLLAPPPKAAPPDTASWDVRVYALNHTAQRLL 74 Query: 71 QEIGTWSLM-APSVTSINQIHVSRRKHFGRT---LINREDYA--LPALGYVVRYGALVTA 124 + W M + +++ + V + L++ + YA AL ++V L A Sbjct: 75 SSVRVWDAMEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTDALAWIVEDRNLDQA 134 Query: 125 LSAALT-KTNVAVLRPEQVSAIDEQGLQADVRLADGRTLSAGVVVQAEGG---VFSEQTA 180 L AAL N+ V++ + +A+ G A + L G++LSA +V+ A+G V + Sbjct: 135 LDAALRFAPNIRVVQ-GRATALAVLGETATLTLESGQSLSASLVIGADGANSWVRGQCDI 193 Query: 181 KAVQRDYDQVAIVAHVTATAAIAHR--AFERFT-AQGPLALLP-QDDGYALVWCVRPDTA 236 R Y Q AIV + + + HR A++ F+ +G +ALLP + +LVW A Sbjct: 194 GLDYRAYGQNAIVTNFSCE--LPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALA 251 Query: 237 RRLLALDEKAFLHELGEVFGGRVGRFASCSAR--HSYPLGLNAAPAASARTVA-IGNAAQ 293 +LL L A L + +G ++PL L A A VA IG+AA Sbjct: 252 DQLLKLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIAPRVALIGDAAH 311 Query: 294 TLHPVAGQGLNLGLRDAAVLASALTR 319 +HP+AG G+NLG D A L L + Sbjct: 312 VVHPMAGHGMNLGFGDVAALIDILLK 337 >gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 144/347 (41%), Gaps = 39/347 (11%) Query: 16 VIICGAGPVGLSAAALLHKRGMPAHRIALIDAKSSEQAAQDPRTIALSHGSQQILQEIGT 75 V I GAGP GL+ A L + G HR++L++ QAA + L +LQ++G Sbjct: 6 VAIAGAGPAGLAMALYLKRAG---HRVSLLE--RFLQAAPVGSGLILQPTGLTVLQDLGL 60 Query: 76 WSLMAPSVTSINQIHVSRRKHFGRTLINREDYALPA--LGYVVRYGALVTALSAALTKTN 133 +S +A I++++ + G+T+++ A+ G V AL L A + Sbjct: 61 FSRIAALGQRIDRLYGADALS-GKTVLDVRYDAIAGGRYGIAVHRAALFGVLLEAAQQEG 119 Query: 134 VAVLRPEQVSAIDEQGLQADVRLADGRTLSAGVVVQAEGGVFSEQTAKAVQR------DY 187 + V + + ++ G QA + ADGR + +V G S A+ Y Sbjct: 120 IEVETGQDIGNLEHTGAQACLTAADGRRIGGFDLVIDASGARSPLRRHALHSCEPRPLPY 179 Query: 188 DQVAIVAHVTATAAIAHRAF-ERF----TAQGPLAL---LPQDDGY-ALVWCVRPDTARR 238 + + H + +R+ T G L + PQD+ A W RPD Sbjct: 180 GAFWVSLRAQPGLSFGHNSLVQRYRRASTMIGVLPIGRPTPQDEPMVAFFWSTRPDRVES 239 Query: 239 LLALDEKAF---LHELGEV---FGGRVGRFASCS----ARHSYPLGLNAAPAASARTVAI 288 L A+ +H L + ++ F + H+ PL R I Sbjct: 240 LKQAGLSAWKDGVHALWPECAPYLAQIDGFEQMTLARYGHHTLPLPYGE------RLAII 293 Query: 289 GNAAQTLHPVAGQGLNLGLRDAAVLASALTRTSSTPAALEQFAAQRR 335 G+AA + P GQG N+ L DA L+ AL ++ + AL ++AA RR Sbjct: 294 GDAAHSTSPQLGQGANMALLDARALSHALQQSETLEQALPRYAASRR 340 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,088,990 Number of extensions: 44231 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 3 Length of query: 347 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 261 Effective length of database: 1,212,660 Effective search space: 316504260 Effective search space used: 316504260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)