BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0061.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310037|ref|YP_003774129.1| XAA-PRO aminopeptidase [Herbasp...   755   0.0  

>gi|300310037|ref|YP_003774129.1| XAA-PRO aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/444 (83%), Positives = 403/444 (90%), Gaps = 2/444 (0%)

Query: 4   ASFIARRASLIAQMQAKGGGVAIIPTAHEVMRNRDADYPYRHDSYFYYLSGFTEPEAVIV 63
           + F ARRA L+A +Q  GGGVAIIPTA EVMRNRDADYPYRHDSYFYYL+GFTEPEAV+V
Sbjct: 6   SPFAARRARLLASLQQAGGGVAIIPTAPEVMRNRDADYPYRHDSYFYYLTGFTEPEAVLV 65

Query: 64  LIAAPGKESRSILFCRDKNLEREIWDGYRYGPDAARQEFGFDEAFAVDTLNKEMPQLLAD 123
           L+A  GKE+RSILFCRDKNLEREIWDGYR+GP AA+Q F  D A  ++ L+K MP LL+D
Sbjct: 66  LVA--GKENRSILFCRDKNLEREIWDGYRHGPQAAQQLFALDAAHPIEELDKSMPALLSD 123

Query: 124 APAVFYALGRDVKRDAQLQEWLQSVRALGRSGITAPSSIVDVNVLLDEMRLFKDAGEIAV 183
           A AV+YALG D KRDAQLQ WLQ VRAL RSG++AP+++VDV+VLLD+MRLFKDA EI V
Sbjct: 124 ARAVYYALGHDDKRDAQLQRWLQGVRALARSGVSAPAAVVDVSVLLDDMRLFKDAYEIDV 183

Query: 184 MKRAGLISAEAHCRAMRLSRPGLREYHLEAELLHEFRNNGSQYPAYGSIVATGANACVLH 243
           MKRAG+ISAEAHCRAMR+ RPGLREYHLEAELLHEFR NGSQYPAYGSIVATGAN+CVLH
Sbjct: 184 MKRAGIISAEAHCRAMRICRPGLREYHLEAELLHEFRRNGSQYPAYGSIVATGANSCVLH 243

Query: 244 YRAGDAELRDGDLVLIDAGCELDSYASDITRTFPANGKFSGPQKELYEIVLAAQDAAIAD 303
           YRAGDAE++DGDLVLIDAGCELDSYASDITRTFPANG FSGPQK LYEIVLAAQ AAIA+
Sbjct: 244 YRAGDAEIKDGDLVLIDAGCELDSYASDITRTFPANGAFSGPQKALYEIVLAAQAAAIAE 303

Query: 304 TRPGKRFMDGHDAAVRVLAQGMLDTGLLDKNKVGSLDDVIAKGDYRQFYMHRTGHWLGMD 363
           T PGKRFMDGHDAAVRVLAQGMLDTGLLDK+KVGSL+DVI KGDYRQFYMHRTGHWLGMD
Sbjct: 304 TAPGKRFMDGHDAAVRVLAQGMLDTGLLDKSKVGSLEDVIEKGDYRQFYMHRTGHWLGMD 363

Query: 364 VHDVGEYRDPATADGDKPWRTLQPGMVLTVEPGIYVRPGEGVPEKYWNIGIRIEDDAHVT 423
           VHDVG+YRDPAT DG KPWRTLQPGMVLT+EPGIYVRPGEGVPE++WNIGIRIEDDAHVT
Sbjct: 364 VHDVGDYRDPATTDGSKPWRTLQPGMVLTIEPGIYVRPGEGVPEQFWNIGIRIEDDAHVT 423

Query: 424 PDGCEILTTAVPNKVADIEALMRS 447
           P GCE+LTT VP KV DIEALMR 
Sbjct: 424 PSGCELLTTGVPTKVEDIEALMRQ 447


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,541,526
Number of extensions: 69846
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)