BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0059.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310039|ref|YP_003774131.1| aminoglycoside phosphotransfera...   524   e-150

>gi|300310039|ref|YP_003774131.1| aminoglycoside phosphotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  524 bits (1349), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/343 (77%), Positives = 294/343 (85%), Gaps = 2/343 (0%)

Query: 3   MSLNNSPADPRLSLLQEWLPTLA-TPTNVDTLRPASADASFRRYFRVDTPDGKTLIVMDA 61
           MS   SP DPRLS L  WL +LA TP    TLRPASADASFRRYFRVDTPDG + IVMDA
Sbjct: 1   MSSPGSPPDPRLSELHTWLASLADTPVLPATLRPASADASFRRYFRVDTPDGGSAIVMDA 60

Query: 62  PPPQENVRPFIHVAEVFGKTGVSVPTLLAQDVERGFLLLSDLGTTTYLNQLNNDTAHKLY 121
           PPPQE+VRPF+ VA +F  TGV+VP +LAQD ERGFLLLSDLG+TTYL+QL+ D+AH LY
Sbjct: 61  PPPQEDVRPFVEVAGLFAATGVTVPKVLAQDCERGFLLLSDLGSTTYLSQLSADSAHALY 120

Query: 122 IDAIDALVLLQTQSKPDVLPEYDRALLSRELQLFPDWYIARHLNVTLTDDQKNTLSKVFD 181
           +DAI+ALVLLQ QSKP+ LPEYDR LL REL+LF +WYI +HL VTLTD+Q   L K FD
Sbjct: 121 MDAIEALVLLQAQSKPEALPEYDRPLLLRELELFREWYIGKHLGVTLTDEQNAVLDKTFD 180

Query: 182 TLLANNLSQTQVFVHRDYHSRNLMVLPTGNPGIIDFQDAVYGPITYDLVSLLRDAYIQWD 241
            +LANNL+Q QV+VHRDYHSRNLMVLP GNPGI+DFQDAVYGPITYDLVSLLRDAYIQWD
Sbjct: 181 AILANNLAQPQVYVHRDYHSRNLMVLPKGNPGILDFQDAVYGPITYDLVSLLRDAYIQWD 240

Query: 242 EEMVLDWVIRYWERAKRAGLSVAPDIDTFYRDFEFMGLQRHLKVLGIFARLYHRDGKDAY 301
           EEMVLDW IRYWE+A+RAGL V PDIDTFYRDFE+MGLQRHLKVLGIFARL+HRDGKD Y
Sbjct: 241 EEMVLDWAIRYWEKARRAGLPVTPDIDTFYRDFEWMGLQRHLKVLGIFARLWHRDGKDGY 300

Query: 302 LKDMPLVMEYTLKAARRYSALIPLVRLIEKLE-DKAPQVGYTF 343
           LKD+PLVMEYTLK ARRY A  PLVRLIEKLE + AP+ GYTF
Sbjct: 301 LKDIPLVMEYTLKTARRYVAFTPLVRLIEKLEQEHAPKFGYTF 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,120,753
Number of extensions: 47546
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)