BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0057.p (464 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c... 604 e-174 gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome... 62 7e-11 gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome... 62 7e-11 >gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] Length = 496 Score = 604 bits (1558), Expect = e-174, Method: Compositional matrix adjust. Identities = 326/499 (65%), Positives = 381/499 (76%), Gaps = 51/499 (10%) Query: 9 RHPLARITSGIV-LMCMSFGMIGSAQAQFAATATPAVPGLQLPPTATPAPAPAAATSRA- 66 R PL T + L+CM G+I +AQAQFA T P P P + PAPA A Sbjct: 5 RTPLLATTKTVTALLCM-LGVISNAQAQFATTIIPVTP-----PETSAQPAPANGKPPAA 58 Query: 67 ---------------------------PRPVDSILVVVNNDVITRQELSERLASVQKRLT 99 PRPVDSI+VVVNN+VITRQE+++RLASV KR++ Sbjct: 59 SPAAPAKAAAPAPAKATAAAPSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRMS 118 Query: 100 AQGVALPPRNQLQSQLLERMIVERAXDHPA---------------ILRIAEQNKMSLADF 144 AQ V LPPR+QL QL+ERMIVERA A + RIA+QNK+S+A F Sbjct: 119 AQNVQLPPRDQLVRQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQF 178 Query: 145 RVQLEREGMAYPAFREDIRREIIMQRLREREVDNKVLVSESEVDNYLAAENNTSVKHEDL 204 R +LE EGM Y +FRE+IRREI+ QRLREREVDNKV+V+ESEVDNYLAAE N + ++L Sbjct: 179 RTRLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQEL 238 Query: 205 NLAQILVRVPENASPEQVAARRQRAEEVLRQLKTGADFAKTAATYSDSSDALSGGDLGWR 264 ++AQIL+RVPENA+P+Q+A RR+RAE+VLRQLKTGADFAKTAA YSD+SDALSGGDLGWR Sbjct: 239 DIAQILIRVPENATPDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWR 298 Query: 265 AQDRLPQLFLDAVASLKPGEVSSIVKSGNGFHILKLIDRRNASATGKAGAPAVEQTHARH 324 DRLPQLFLD VA L+ G+VS ++KSGNGFHILKL+ RR A A AV+QTH RH Sbjct: 299 PADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAP-AVQQTHVRH 357 Query: 325 ILIKVNQVVSAAEARRKLLELKERLDHKAATFEELAKLYSNDLSASKGGDLGWIYPGDTV 384 ILIKVNQVV+AAEA+RKL ELKERLDH +ATFEELAKLYSNDLSASKGGDLGW+YPGDTV Sbjct: 358 ILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTV 417 Query: 385 PEFERAMNELKPGEVSQPIESPFGFHLIQVVERKTDDGSQERARLAARQAIRERKIDEAT 444 PEFERAM++LKPGEVSQPIE+PFG+HLIQVVERKTDD S+ERAR AARQAIRERKIDEAT Sbjct: 418 PEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKERARQAARQAIRERKIDEAT 477 Query: 445 EDWLRQLRDRAYVEFRTDD 463 EDW+RQ+RDRAYVE+R D+ Sbjct: 478 EDWMRQIRDRAYVEYRNDE 496 >gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae SmR1] Length = 639 Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 318 EQTHARHILIKVNQVVSAAEARRKLLE---LKERLDHKAATFEELAKLYSND-LSASKGG 373 EQ A HILI V + SAA+ + L +L F +LAK S D SA GG Sbjct: 266 EQRRASHILIAVKKDASAADQAAAKSKAEGLVAQLRKNPGEFAKLAKANSQDPGSAENGG 325 Query: 374 DLGWIYPGDTVPEFERAMNELKPGEVSQPIESPFGFHLIQVV 415 DLG+ G V FE A LK GE+S P++S FG+H+I+V Sbjct: 326 DLGYFGKGAMVKPFEDAAFSLKQGEISDPVQSDFGYHIIEVT 367 >gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 16/143 (11%) Query: 318 EQTHARHILIKVNQVVSAAEARRKLLELKERLDHKAATFEELAKLYSNDLSASKGGDLGW 377 ++ HARHIL+ + A A+ K FE+LAK + SA+ GGDL W Sbjct: 130 KEYHARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDW 179 Query: 378 IYPGDTVPEFERAMNELKPGEVS-QPIESPFGFHLIQVVE-RKTDDGSQERARLAARQAI 435 P V F AM LK GEV+ P+++ FG+H+I++ + R + + + +A+ Sbjct: 180 ATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL 239 Query: 436 RERKIDEATEDWLRQLRDRAYVE 458 +++K+ E QLR +A V+ Sbjct: 240 QQKKLQAYQE----QLRAKAKVQ 258 Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 40/236 (16%) Query: 74 LVVVNNDVITRQELSERLASVQKRLTAQGVALPP--RNQLQSQLLERMIVERAXDHPAIL 131 L VVN I S R + K++TAQG P R ++ +L+ R I+ + D Sbjct: 25 LAVVNGKAIP----SSRAELMVKQMTAQGQPDSPQLRGAIKEELINREILMQEAD----- 75 Query: 132 RIAEQNKMSLADFRVQLEREGMAYPAFREDIRREIIMQRLREREVDNKVLVSESEVDNYL 191 +Q + D + QLE A + + R +I L++ V + + +E + Sbjct: 76 ---KQGLANSTDVKNQLEL------ARQSIVIRALIADYLKKNPVSDADIKAEYDKFKAQ 126 Query: 192 AAENNTSVKHEDLNLAQILVRVPENASPEQVAARRQRAEEVLRQLKTGADFAKTAATYSD 251 A + +H ILV +++ AE ++ +LK G F A D Sbjct: 127 AGDKEYHARH-------ILVD------------KKEDAEAIIAKLKAGTKFEDLAKQSKD 167 Query: 252 SSDALSGGDLGWRAQDRLPQLFLDAVASLKPGEVS-SIVKSGNGFHILKLIDRRNA 306 + A +GGDL W + F DA+ +LK GEV+ + V++ G+H++KL D R A Sbjct: 168 TGSAANGGDLDWATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPA 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,122,722 Number of extensions: 38704 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 5 Length of query: 464 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 375 Effective length of database: 1,198,455 Effective search space: 449420625 Effective search space used: 449420625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)