BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0056.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310042|ref|YP_003774134.1| 4-hydroxythreonine-4-phosphate ...   544   e-156

>gi|300310042|ref|YP_003774134.1| 4-hydroxythreonine-4-phosphate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  544 bits (1402), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/336 (80%), Positives = 297/336 (88%)

Query: 15  RPTLAITCGEPAGIGPEISVKAAWQLRAEVRSVLLGDAAFLAQTAQALDPAIALSALSLQ 74
           RP LA+TCGEPAGIGPEIS++AAW+LR EVR +LLGDAA LAQ+A  +D  + ++A+S+Q
Sbjct: 3   RPILALTCGEPAGIGPEISLRAAWELRHEVRCILLGDAALLAQSAYEIDAQMRVAAISIQ 62

Query: 75  AFRNSGLPNFPQDRLIVIDCPTSEPVVPGVLDARNGRAVLQTLDVAVEWALQGQFDAIVT 134
           A+RNSGLP+FP D L VIDCP +EPV PGVLDARNGRAVLQTLD+AV+ AL G F AIVT
Sbjct: 63  AWRNSGLPHFPTDCLTVIDCPVAEPVRPGVLDARNGRAVLQTLDLAVQGALSGAFAAIVT 122

Query: 135 APLQKSTINDAGVPFTGHTEYLAERTATPQVVMMLAGGDAPHLRVALATTHLALKDVSAA 194
           APLQKSTINDAGV FTGHTEYLAE T TPQVVMMLAGG +PHLRVALATTHLALKDV AA
Sbjct: 123 APLQKSTINDAGVAFTGHTEYLAEVTHTPQVVMMLAGGQSPHLRVALATTHLALKDVPAA 182

Query: 195 ITFDGLSRTLDIIHADLRDKFGIAQPRILVTGLNPHAGENGYLGREEIDVISPALAAAKA 254
           IT D L+RTLDI+HADLR KFGIA+PRILVTGLNPHAGENGYLGREEI+VISPAL AA+A
Sbjct: 183 ITADSLARTLDILHADLRSKFGIARPRILVTGLNPHAGENGYLGREEIEVISPALEAARA 242

Query: 255 RGIDVAGPYPADTLFQHKYLEHADCVLAMYHDQGLPVLKFASFGQGINITLGLPIIRTSV 314
           RGID  GPYPADTLFQ KYLE ADCVLAMYHDQGLPVLKFASFG GINITLGLP+IRTSV
Sbjct: 243 RGIDARGPYPADTLFQPKYLEDADCVLAMYHDQGLPVLKFASFGHGINITLGLPLIRTSV 302

Query: 315 DHGTALDLAAQGLGRADHGSMIEAIRTAALMARAKN 350
           DHGTALDLAA GLG ADHGSM+ A+R AA MAR + 
Sbjct: 303 DHGTALDLAAAGLGHADHGSMLVAVRAAADMARRQK 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,172,721
Number of extensions: 53476
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)