BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0055.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310043|ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-ad...   414   e-117

>gi|300310043|ref|YP_003774135.1|
           S-adenosylmethionine-6-N',N'-adenosyl (rRNA)
           dimethyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  414 bits (1064), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/268 (77%), Positives = 230/268 (85%), Gaps = 10/268 (3%)

Query: 1   MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60
           MKHI RKRFGQNFLTD+ VLHDII++IAP  DD MVEIGPGLAAMT LLLE L  +H + 
Sbjct: 1   MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVV- 59

Query: 61  RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120
                 LD  RDLV RL+K+FD  RL VHSADALKFDF++IPVP GRKLRVVGNLPYNIS
Sbjct: 60  -----ELD--RDLVERLKKRFDAARLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNIS 112

Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180
           SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSKA+GRLSVMLQWRY M+L+FVVPPT
Sbjct: 113 SPLLFHLAEIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPT 172

Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240
           AFDPPP+V+SAIVRMIP+A PL C Q+LLE+VVTKAFSQRRKVIRNCVAGL  E +L   
Sbjct: 173 AFDPPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQV 232

Query: 241 GIDPQARPEAVPMEQFVALANVL--RQH 266
           GIDPQARPEAVPMEQFVALAN+L  RQH
Sbjct: 233 GIDPQARPEAVPMEQFVALANLLAARQH 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 834,595
Number of extensions: 33287
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)