BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0053.p (569 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 536 e-153 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 504 e-144 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 499 e-142 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 499 e-142 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 471 e-134 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 536 bits (1380), Expect = e-153, Method: Compositional matrix adjust. Identities = 316/528 (59%), Positives = 404/528 (76%), Gaps = 1/528 (0%) Query: 1 MRIANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M+++N I RL +GFG L++L+++MA G+ RL LN QM +VI+DKYPKTV+A DI+ Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 NVNVIARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMD 120 +N+IARS RN+LL+ +I E + I A + + L +LD L+T RA + +++ Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 ARTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKE 180 A+ Y RD+VL +V G K A +L+ VRP+Q M+A + LI Q+E+M+ A E Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 VEEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 VE Y +AR L++ L+ L A +IAW++TRSIT+PL RAV+VAETVAAGDLTS DA Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 241 AKDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEE 300 +DET LLRAL+ MND LLDIVS+VR TDTIATAS++IA GNLDLSSRTE+QA+SLEE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 301 TASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDI 360 TASSME+LT+TVKQNA +A +A++LA SAS +A +GG VVG VV TM +I+ASS+KIVDI Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA EIK+LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAHEIKALIADS 420 Query: 421 VEKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVT 480 V +V +GSKLVEQAG+TM+EVV SV+RV ++V EI+ A +EQS GIEQVN A+ QMDQVT Sbjct: 421 VARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISSAGQEQSAGIEQVNLAIVQMDQVT 480 Query: 481 QQNAALVEEAAAAAQSLQDQATSLSQIVGVFKI-DSNRLPDKAGASSS 527 QQNAALVE+AAAAAQ+LQDQA L+++V +FK+ D+ P + A +S Sbjct: 481 QQNAALVEQAAAAAQALQDQAAQLARMVSIFKLEDAASEPRRVAAPAS 528 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 504 bits (1298), Expect = e-144, Method: Compositional matrix adjust. Identities = 308/577 (53%), Positives = 404/577 (70%), Gaps = 10/577 (1%) Query: 1 MRIANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M+I++ +I RLG F L++++ +A +GV L +++ DE++ND+Y K L I Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNVIARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMD 120 VN ARS RN ++ + +E K + + L +++ +G L+ ++ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKE 180 AR Y+ R +V+ L+ +++AT L P+Q Y +AV+ +++ Q+ LM +++ Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 VEEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 A N+++ LS +A++ + L A L+TRSIT PL+ AV+VA VAAGDLT Q +A+ Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 AKDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEE 300 +KDETG LL AL++MNDNL IV+ VR GTDTI TAS +IA GNLDLSSRTEQQA +LEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDI 360 TAS+MEELTSTV+QNA+NAR+AN LA +AS VA++GG+VVG+VV TM IN +SRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VEKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVT 480 VE+V+SGS+LV QAG TM EVV+SV+RVTD+V EIT AS EQS+GIEQ+NQA+ QMD+VT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQSLQDQATSLSQIVGVFKIDSNRLPDKAGASSSVQQRPHDVTPKTP 540 QQNAALVE+AAAAAQSLQ+Q+ LS VG+F++ ++ + S+ V QR V P P Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPV-QRSVQVAPARP 540 Query: 541 SLARKQEAPRLPAAART--------PVTGKDDDWEQF 569 LARK R A A++ D WEQF Sbjct: 541 VLARK-PVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 499 bits (1286), Expect = e-142, Method: Compositional matrix adjust. Identities = 300/518 (57%), Positives = 383/518 (73%), Gaps = 4/518 (0%) Query: 1 MRIANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M++ + +I RL + F L+ ++ + +G+ LS +++ ++ D+Y K LA +I Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NVNVIARSSRNVLLMTDADEIGKEMQTIKKAGDSTKAT--LEKLDSLITGDKGRALMKSI 118 NVN AR+ RN LL + +E + + + A +S K T L K++ +++ +GR L +SI Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLD--RSAANSAKTTEALGKMEKILSTARGRELFQSI 118 Query: 119 MDARTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVAS 178 +AR+ YN RD++ L+ K +A LL V P Q Y ++ +A Q LM+ + Sbjct: 119 QEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSV 178 Query: 179 KEVEEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFD 238 E + A +++ LS +A+ + AWLVTRSIT PL+ AV VA VAAGDLT Q Sbjct: 179 TEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIG 238 Query: 239 ASAKDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSL 298 A++KDETG LL AL++MND+L IVS VR G+DTI TAS +IA GNLDLSSRTE+QA +L Sbjct: 239 ATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGAL 298 Query: 299 EETASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIV 358 EETAS+MEELTSTVKQNA+NAR+AN LA +AS VAV+GG+VVG+VV TM IN +SRKIV Sbjct: 299 EETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIV 358 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLID 418 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK+LID Sbjct: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALID 418 Query: 419 DSVEKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQ 478 DSV +VD+GS+LVEQAG TM EVV+SVRRVTD+V EI+ AS EQS+GIEQ+N A+TQMDQ Sbjct: 419 DSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQ 478 Query: 479 VTQQNAALVEEAAAAAQSLQDQATSLSQIVGVFKIDSN 516 VTQQNAALVEEAAAAAQSLQ+Q+T LS V VFK+ S+ Sbjct: 479 VTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSH 516 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 499 bits (1284), Expect = e-142, Method: Compositional matrix adjust. Identities = 301/558 (53%), Positives = 384/558 (68%), Gaps = 14/558 (2%) Query: 1 MRIANFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIK 60 MR N I RL I F L+L++ + LG+ RL+ +N+ +D V+ND+Y K + N I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 NVNVIARSSRNVLLMTDADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMD 120 V+ +A S RN LLMTD +I E +TI+ ++L L+ + +A + + + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 ARTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKE 180 R Y R ++ +L +G K+ A L+L + PLQ Y S ++ L Q +LM + + Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 VEEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 E Y R +++ V+A FA IAW ++RSIT PLSRAV+VAETVAAGDLT+ A Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 AKDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEE 300 + DETG+LL+AL AMN L IV VR GTD++ TASTQIA GNLDLSSRTE+QAS+LEE Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 Query: 301 TASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDI 360 TASS+EELTS+VKQNA++ R++++LA +AS VA +GG V +VV TM +IN SS KIVDI Sbjct: 301 TASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI+DS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 Query: 421 VEKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVT 480 V +V SG++LV QAG TM+ VV+S+ +V+ IVGEI+ A+REQS+GIEQVNQA+ QMD T Sbjct: 421 VNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTT 480 Query: 481 QQNAALVEEAAAAAQSLQDQATSLSQIVGVFKIDSNRLPDKAGASSSVQQRPHDVTPKTP 540 QQNAALVEEAAAAAQ+LQDQA L +VGVF++ D+ G S P V P P Sbjct: 481 QQNAALVEEAAAAAQALQDQAQRLLDLVGVFRL------DEVGGSGPA---PSAVAPVAP 531 Query: 541 SLAR-KQEAPR----LPA 553 L + APR LPA Sbjct: 532 VLRKVSAAAPRATKSLPA 549 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 471 bits (1212), Expect = e-134, Method: Compositional matrix adjust. Identities = 269/513 (52%), Positives = 368/513 (71%), Gaps = 5/513 (0%) Query: 5 NFRIGARLGIGFGFLVLLLVSMAVLGVTRLSGLNEQMDEVINDKYPKTVLANDIIKNVNV 64 N ++ RL F F+V LL ++V +++ +N +D+++ND+Y K A D+ VN Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 Query: 65 IARSSRNVLLMTD---ADEIGKEMQTIKKAGDSTKATLEKLDSLITGDKGRALMKSIMDA 121 + R + + + A+E K ++ A TK L+K+ + G+ K++ +A Sbjct: 67 QIKYLRGIAIDIENRPANE--KRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124 Query: 122 RTQYNVGRDEVLRLVVAGAKNDATMLLLQTVRPLQLTYMSAVETLIAHQNELMQVASKEV 181 R ++ + + L LV AG A +L+ + Q Y++ Q+ +Q + Sbjct: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184 Query: 182 EEEYIEARNLVIALSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDASA 241 + A + +A S+ A++ A ++ +L+ RSI PL+ AV+VAE VAAGDLT++ + + Sbjct: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244 Query: 242 KDETGQLLRALRAMNDNLLDIVSRVRHGTDTIATASTQIAAGNLDLSSRTEQQASSLEET 301 +DETGQL++ALR MNDNL++IVS VR GT++I TAS +IA+GNLDLS+RTEQQA SLEET Sbjct: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEET 304 Query: 302 ASSMEELTSTVKQNAENAREANKLAVSASAVAVEGGNVVGKVVHTMESINASSRKIVDII 361 AS+MEE+TSTV+QNA+NAR+AN++AVSAS +A++GG +VG+VVHTM+ IN SSRKIVDII Sbjct: 305 ASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDII 364 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LI DSV Sbjct: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSV 424 Query: 422 EKVDSGSKLVEQAGQTMNEVVSSVRRVTDIVGEITEASREQSEGIEQVNQAVTQMDQVTQ 481 KV+ GS LV QAG TM +VVSSVR VTDIV EI+ AS EQS GIE++N+AVTQMD+ TQ Sbjct: 425 GKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484 Query: 482 QNAALVEEAAAAAQSLQDQATSLSQIVGVFKID 514 QNAALVE+AAAAA+S+Q+QA L+Q + +FK++ Sbjct: 485 QNAALVEQAAAAAKSMQEQAVRLTQSISIFKLE 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,204,832 Number of extensions: 39545 Number of successful extensions: 631 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 299 Number of HSP's successfully gapped: 72 Length of query: 569 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 479 Effective length of database: 1,193,720 Effective search space: 571791880 Effective search space used: 571791880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)