BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0051.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310048|ref|YP_003774140.1| metal-dependent hydrolase [Herb...   435   e-123

>gi|300310048|ref|YP_003774140.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  435 bits (1119), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/288 (75%), Positives = 240/288 (83%), Gaps = 11/288 (3%)

Query: 36  FFTPTPLETTQDSP-PPPLLQQDYAPAPELKQQTPLPPMSPPIGRPADGMRRIQLGEHHL 94
             TP P+     +P P PL+    APA         P ++PP  RPADG RRIQLGEH +
Sbjct: 18  IVTPNPV--VHAAPLPTPLIPDVPAPAS--------PLLAPPSARPADGKRRIQLGEHTI 67

Query: 95  DYALLRSKRRSIGFLISDEGLRVTAPKWVTLGEIENAIREKQRWIFTKLNERRERSARRL 154
           D+ALLRSKRR+IGFL+SDEGLRVTAPKWVTL EI+NAIREKQRWI +KLNERRERSARRL
Sbjct: 68  DFALLRSKRRTIGFLVSDEGLRVTAPKWVTLAEIDNAIREKQRWILSKLNERRERSARRL 127

Query: 155 QPQMQWRDGATLPYLGQDITLRIRANQAAGIAYDEDTLELTVGLPADAGEQQLKDRVQGW 214
           QPQMQWRDGATLPYLG DITLRIR  Q   +  DE T EL + LPADAGEQQLKDRVQGW
Sbjct: 128 QPQMQWRDGATLPYLGSDITLRIRTGQRQAVYLDELTRELNISLPADAGEQQLKDRVQGW 187

Query: 215 LQARAKETFAARLPVYAEKLGVTYQSFALSSATTQWGSCTADGRIRLNWRLMHFSLPLID 274
           +QARA+E F  RL +YAEKLGV Y+S+ALSSATTQWGSCT+D RIRLNWRLMHF+LPLID
Sbjct: 188 IQARAEELFGKRLMIYAEKLGVQYRSYALSSATTQWGSCTSDARIRLNWRLMHFALPLID 247

Query: 275 YVIAHELSHLREMNHSPRFWATVQSIFPEFETAKRALRDSAPETLPIF 322
           YVIAHEL+HLREMNHSPRFWATVQSIFPEFE+AK+ALRDSAPET+PIF
Sbjct: 248 YVIAHELAHLREMNHSPRFWATVQSIFPEFESAKKALRDSAPETMPIF 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,586
Number of extensions: 41785
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)