BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0048.p
         (703 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta cha...  1124   0.0  

>gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta chain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/706 (82%), Positives = 627/706 (88%), Gaps = 3/706 (0%)

Query: 1   MTQTLLVELLTEELPPKVLAKLGDAFANGIFNGLKSRDFLEEGATATTYATPRRLAVSIT 60
           M QTLLVEL+TEELPPK LAKLGDAFA GIFNGL+SR +L+  ATAT YATPRRLAVSIT
Sbjct: 1   MNQTLLVELVTEELPPKALAKLGDAFATGIFNGLQSRGYLDADATATAYATPRRLAVSIT 60

Query: 61  NVRATSLDKAIREKVLPVSVALDAEGRPAAPLVKKLAALAAQVGATVITPDQLELAQDGK 120
            V A S DK+IREKVLPVSVALDAEGRP+APLVKKLAALAA  GATVITPDQLE AQDGK
Sbjct: 61  QVCAASPDKSIREKVLPVSVALDAEGRPSAPLVKKLAALAASTGATVITPDQLERAQDGK 120

Query: 121 AESFFYNYTAKGGALQSGLQAALEESVARLPIPKLMSYQRQHGRDAGNTVHFVRPAHRLI 180
           AESFFY YTAKG AL  GLQAAL+ES+++LPIPK+MSYQRQ GR AG TVHFVRPAH L+
Sbjct: 121 AESFFYTYTAKGSALAVGLQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLV 180

Query: 181 ALHGSSVVALNILGLDADKITQGHRFLSQGAIAIDSPETYVETLISKGKVIPGFTERKEK 240
           AL G+ VV +N LGLDA + T GHRFLS GA+ I +P+ YVE+L  +G VI  FTER+EK
Sbjct: 181 ALLGNDVVPINTLGLDAGRTTLGHRFLSAGALQIAAPDAYVESLAQQGNVIASFTERREK 240

Query: 241 IRLDLLGKAGDDKVLMPEALLDEVTALVEWPVVYECKFDDQFLAVPQECLILTMQTNQKY 300
           IR  LL KAG D+VLMPEALLDEVTALVEWPVVYECKF+D+FLAVPQECLILTMQTNQKY
Sbjct: 241 IRAALLAKAGADQVLMPEALLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQTNQKY 300

Query: 301 FALTDTNGKLRSRFLIVSNLETSNPQHIIQGNERVVRPRLSDAKFFFEQDKKKTLADRVP 360
           FALTD NG+LRSRFLIVSNLET++P+HII GNERVVRPRLSDAKFFFEQDKKKTLA+RVP
Sbjct: 301 FALTDANGRLRSRFLIVSNLETAHPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAERVP 360

Query: 361 QLANVVYHNKLGNQLQRTERVKALAGAIAKLLGNDVALAERGALLAKTDLLTDMVGEFPE 420
           QLANVVYHNKLGNQLQRTERV+ALAG IA LLG DV LAERGALLAK DLLTDMVGEFPE
Sbjct: 361 QLANVVYHNKLGNQLQRTERVQALAGKIASLLGGDVKLAERGALLAKADLLTDMVGEFPE 420

Query: 421 LQGIMGAYYARHDGEPDEVALAASEHYQPRFAGDALPASATGTAVALADKLETLVGIWGI 480
           LQGIMG YYARHDGE DEVALAASEHYQPRFAGDALP +ATGTAVALADKLETLVGIWGI
Sbjct: 421 LQGIMGTYYARHDGEADEVALAASEHYQPRFAGDALPTTATGTAVALADKLETLVGIWGI 480

Query: 481 GLQPTGDKDPFALRRHALGVLRMLVEKRLPLAIPALLQAAVAQFAGNSNFKDPSADVSAF 540
           GLQPTGDKDPFALRRHALGVLRMLVEKRLPL++ ALL AA   FAGN+NFKDP ADV AF
Sbjct: 481 GLQPTGDKDPFALRRHALGVLRMLVEKRLPLSLTALLDAATGLFAGNANFKDPRADVQAF 540

Query: 541 LFDRLRGLLRERNYSPNEIEAVVAQQPEVLDNITERLDAVQAFAALPEAEALAAANKRIT 600
           ++DRLRGLLRER ++ NE+EAVVAQQPEVLDN+ ERL AVQAFAALPEAEALAAANKRIT
Sbjct: 541 IYDRLRGLLRERGFAQNEVEAVVAQQPEVLDNVVERLQAVQAFAALPEAEALAAANKRIT 600

Query: 601 NILKKIEG---GVSGTVQNGLLREAAEQALYSAMLLLKPQVDAAYAQGNFSGALKALAQL 657
           NILKKIEG      G VQ  LL+EAAEQ L++AM   +PQV+AAYA+G+F+GALKALAQL
Sbjct: 601 NILKKIEGVAIDAHGAVQESLLQEAAEQGLFAAMQTTRPQVEAAYAKGDFAGALKALAQL 660

Query: 658 RQNVDAFFNDVMVNAEDEQLRHNRQALLAELHQMLNQVADISKLAA 703
           RQNVDAFFNDVMVNAEDEQLR NRQALLA LH MLNQVADISKLAA
Sbjct: 661 RQNVDAFFNDVMVNAEDEQLRKNRQALLAALHGMLNQVADISKLAA 706


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,913,955
Number of extensions: 76481
Number of successful extensions: 260
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 611
Effective length of database: 1,184,250
Effective search space: 723576750
Effective search space used: 723576750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)