BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0046.p
         (531 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferas...   664   0.0  

>gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/511 (70%), Positives = 400/511 (78%), Gaps = 12/511 (2%)

Query: 32  LFALLAGVANVLAFAPFNIWPVQILTLAWLFRQI--SRTASFRRNALTGWLYGFGWAACG 89
           L  + AG  NV AFAPF +WP+QIL LAWLF  +     AS R   L GWLYGFGWAA G
Sbjct: 29  LMPVAAGAINVFAFAPFKLWPLQILALAWLFHGVLAQPQASMRSQFLRGWLYGFGWAAAG 88

Query: 90  VHWLYISMHDYGGMAGWMAALAVGLLAAYLGLYAALTATLASWLRQRWAASPLVVLLLLL 149
           VHWLYISMHDYGGM  WMAALAVGLLA YLGLYA      ASWLR RW++SPLV+ L +L
Sbjct: 89  VHWLYISMHDYGGMPAWMAALAVGLLALYLGLYAGAATAAASWLRTRWSSSPLVLALFML 148

Query: 150 PALWALSEWLRGWLFTGFPWLTSGYAHNVGPLAGFAPVVGVYGLAWFAAIIAGSLAMLSL 209
           PALWAL EW RGW+FTGFPWL SGYAH  GPLAGFAPV GVY + W AA+IAGSLA+L +
Sbjct: 149 PALWALMEWARGWVFTGFPWLVSGYAHTAGPLAGFAPVGGVYLVGWIAALIAGSLALLWM 208

Query: 210 R--------TGPRV-LPAALTLLLAGAGVALHAVDWTHAQGQPISVRLLQGNIPQEMKFS 260
                    TG R+ LP     LL   GVAL  V WT  QGQPISVRLLQGNIPQEMKFS
Sbjct: 209 GLSRKGVAGTGQRIILPLCAAALLCAGGVALRLVKWTAPQGQPISVRLLQGNIPQEMKFS 268

Query: 261 NEALLSSLMMYDDMIRSAPADLIATPETAVPLLPQQLPPDYLARLTRFVQTSGSHLALGI 320
           N+AL+++L MY+ MI +APADLIATPETA+PLLPQQLPPDYL R+ RF Q SGSHLALGI
Sbjct: 269 NDALVATLGMYEQMISAAPADLIATPETAIPLLPQQLPPDYLERIARFAQVSGSHLALGI 328

Query: 321 PLSDGPGQYANSMIGFSPDPASERMPYRYDKHHLVPFGEFIPLGFRWFVDMMNIPLGDMT 380
           PLSDGP  YANS++GF P   S  +PYRYDKHHLVPFGEFIP GFRWFVDMM+IPLGDMT
Sbjct: 329 PLSDGPQLYANSVLGFGPGMGSAFLPYRYDKHHLVPFGEFIPPGFRWFVDMMHIPLGDMT 388

Query: 381 RGKPLQLPFQVKQQWIMPNICYEDLFGEEIAAQLGGAYYAGQPQASMLLNLSNIAWFGNS 440
           RG P+Q PF VK QW++PNICYEDLFGEEIA QL  AY A QP+AS+LLNLSNIAWFGNS
Sbjct: 389 RGAPVQSPFGVKDQWVLPNICYEDLFGEEIAGQLRAAYRAAQPEASVLLNLSNIAWFGNS 448

Query: 441 IALPQHLQISQMRALETGRPMLRATNTGATAVIGPKGQLVSELQPYTRNMLSASVQGFQG 500
           IALPQHLQISQMR LETGRPMLRATNTGATAVI P G   SEL PYTR +LSA+VQG+ G
Sbjct: 449 IALPQHLQISQMRTLETGRPMLRATNTGATAVILPGGA-TSELPPYTRGVLSATVQGYGG 507

Query: 501 QTPYILLGNKLMLALTVAALAAAWLLSRRKR 531
           QTPYILLGNKL+L L +  L  AW  ++  R
Sbjct: 508 QTPYILLGNKLVLGLALLMLLLAWGRNKAAR 538


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,347,636
Number of extensions: 50202
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,193,720
Effective search space: 526430520
Effective search space used: 526430520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)