BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0043.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...   310   9e-86
gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...    70   2e-13

>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  310 bits (793), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 186/246 (75%), Gaps = 2/246 (0%)

Query: 15  ELILKDARRELELSMPSRRLFGKHALTLGGLSLLSGCNLTEQESVNRMLTRISRMNDGVQ 74
           +++L D R  L      RRL  + AL+LG LS+LSGC+L + +SV+++L  +SR ND VQ
Sbjct: 14  KILLADHRPAL--VQVQRRLMLRSALSLGALSMLSGCDLQDNDSVDKVLWAMSRWNDRVQ 71

Query: 75  AWLFDPTKLAPTYPASMITRPFPFNAFYGEDEITEVDGDAYRLELKGLVAIRRTWSLAEL 134
           A LF   KLAPTY AS IT PFPFNAFY E    ++DG  ++LE+ GLV+ +R+W+L  L
Sbjct: 72  ALLFRSHKLAPTYAASQITHPFPFNAFYDEFNAPDIDGSDWKLEVSGLVSDKRSWTLERL 131

Query: 135 RRLPQVEQITRHICVEGWSAIGRWGGVPFAGFLKHIGADLSAKYIAFRCADDYYTSIDMA 194
           R LPQ  QITRHIC+EGWSAIG+W GVP   FL+ +GADL+A+Y+ F+CAD YY+S+DM 
Sbjct: 132 RALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKCADRYYSSLDMP 191

Query: 195 TALHPQTQLTLTYDGEILPPKYGFPMKLRMPTKLGYKNPKHIVSIEVTNTYPGGYWEDQG 254
           TALHPQT L L +  E LP +YG+P+K+R+PTKLG+KNPKH+V+I V+N  PGGYWEDQG
Sbjct: 192 TALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPGGYWEDQG 251

Query: 255 YNWFGG 260
           YNWF G
Sbjct: 252 YNWFSG 257


>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 115 YRLELKGLVAIRRTWSLAELRRL-PQVEQITRHICVEGWSAIGRWGGVPFAGFLKHIGAD 173
           + ++++G V    T  L  L +L P  E+I R  CVEGWS +  W G   +  +K     
Sbjct: 106 WTIDIEGEVKKPFTLDLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIKKAEPT 165

Query: 174 LSAKYIAFRCADD---------------YYTSIDMATALHPQTQLTLTYDGEILPPKYGF 218
            +AKY+ F    D               Y   + +  A HP T LTL   GE+LP + G 
Sbjct: 166 GNAKYVEFVTLADKKQMPGLSDPILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGA 225

Query: 219 PMKLRMPTKLGYKNPKHIVSIEVTNTYPGGYW 250
           P+++ +P K G+K+ K IV I      P   W
Sbjct: 226 PVRIIVPWKYGFKSAKSIVKIRFVKDEPKTAW 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 841,698
Number of extensions: 33325
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)