BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0039.p
         (367 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible ...   587   e-169
gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible ...   106   3e-24

>gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 373

 Score =  587 bits (1514), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/380 (78%), Positives = 327/380 (86%), Gaps = 22/380 (5%)

Query: 1   LKKSPNQPHYFIPQPLDNKRLAHLCGPLDENLRQISSALDVTIFRRGEKFIVSGTNAERA 60
           +KK PNQPH+F PQPLDNKRLA+LCG LDENLRQIS+ALDVTIFRRG++FIV+GTNAERA
Sbjct: 1   MKKIPNQPHHFTPQPLDNKRLANLCGALDENLRQISAALDVTIFRRGDRFIVTGTNAERA 60

Query: 61  VAVLDRFYTRADKPVSVEDVQLALVEQRATATIDAE-------------LDDADIAVDKK 107
           V VL+RFY +AD+PV+V+D+QLALVEQRA A  D E                A +  DK 
Sbjct: 61  VEVLERFYDKADRPVAVDDIQLALVEQRANAAADEEAGLPPLPARRGKAAVAAAVEEDKD 120

Query: 108 DKTEI-ESPVLKTRKHDLRGRTPHQSQYLHAILEHDITFGVGPAGTGKTYLAVACAVDAL 166
            +  + ESPVLKTRKHDLRGRTPHQSQYL+AILEHDITFGVGPAGTGKTYLAVACAVDAL
Sbjct: 121 SQDPLPESPVLKTRKHDLRGRTPHQSQYLNAILEHDITFGVGPAGTGKTYLAVACAVDAL 180

Query: 167 ERDAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQA 226
           ERDAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQA
Sbjct: 181 ERDAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDRTQKLFEKQA 240

Query: 227 IEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDVTQIDLHHGQ 286
           IEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAV+TGDVTQ+DLHHGQ
Sbjct: 241 IEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVDLHHGQ 300

Query: 287 KSGLVDALNVLHDVRGIAFSRFTSSDVVRHPMVARIVDAYEAVSGAGNSHNAHSAQVTSS 346
           KSGLVDA++VLH+VRGIAFSRFTS+DVVRHP+VARIVDAY+A   AGNS    +     +
Sbjct: 301 KSGLVDAISVLHEVRGIAFSRFTSADVVRHPLVARIVDAYDA---AGNSKPDTARATART 357

Query: 347 TAVKRLSQGLTQSAKPRHAK 366
                 +  LT+SAKPRHAK
Sbjct: 358 A-----TNLLTKSAKPRHAK 372


>gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 11/152 (7%)

Query: 140 EHDITFGVGPAGTGKTYLAVACAV-DALERDAVQRIVLTRPAVEAGERLGFLPGDLAQKV 198
           E D    +G AGTGKT LA+A  +   LE      I++TR  V  GE +GFLPG   +K+
Sbjct: 371 ECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGEDIGFLPGTEEEKM 430

Query: 199 DPYLRPLYDALYDL---------LGFDRTQKLFEKQAIEIAPLAYMRGRTLNHAFIILDE 249
            P++    D L  L          G   TQ L  +  I+I  L +MRGRT  + F+I+DE
Sbjct: 431 GPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLI-RSRIKIKSLNFMRGRTFVNKFLIIDE 489

Query: 250 AQNTTPEQMKMFLTRIGFGSKAVVTGDVTQID 281
           AQN TP+QMK  +TR G G+K V  G++ QID
Sbjct: 490 AQNLTPKQMKTLVTRAGPGTKIVCLGNIAQID 521


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,083,401
Number of extensions: 43980
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,207,925
Effective search space: 338219000
Effective search space used: 338219000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)