BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0037.p (375 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310059|ref|YP_003774151.1| LysR family transcription regul... 330 1e-91 gi|300312373|ref|YP_003776465.1| LysR family transcription regul... 100 3e-22 gi|300312300|ref|YP_003776392.1| LysR family transcription regul... 97 2e-21 gi|300310322|ref|YP_003774414.1| LysR family transcription regul... 95 1e-20 gi|300312785|ref|YP_003776877.1| transcription regulator protein... 87 3e-18 >gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 330 bits (845), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 163/240 (67%), Positives = 192/240 (80%), Gaps = 16/240 (6%) Query: 16 ADWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRL 75 ADWE LR+FAAF+++GSFSGAARVLGVTHAT+ RRLQ LE L PLF RR DD ELTRL Sbjct: 3 ADWESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELTRL 62 Query: 76 GETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQL 135 GE+VL+AAR MQ QT QLAR LAGED+RMEGKLR+A T+AM T+FLAPRLP+LL++WP L Sbjct: 63 GESVLAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWPAL 122 Query: 136 DIEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAEWRARAAP 195 DIE +M HQT+SLARR+ADLA+RFARPQDG+LIAR+LG + ++LCG+ ++VA WR + Sbjct: 123 DIELAMGHQTLSLARREADLALRFARPQDGELIARRLGVVRFYLCGTADQVAAWRHQ--- 179 Query: 196 GSAPFIGXRARAAPGSAPFIGFDDGVPDIPETQWLADHAGGNPVRFRSTSLVTQCMAARA 255 GSAP IG+DD VPDIPET+WLA HA GNPVR RS SLV QCMAARA Sbjct: 180 -------------RGSAPVIGYDDSVPDIPETRWLAAHADGNPVRLRSASLVAQCMAARA 226 >gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 13/240 (5%) Query: 17 DWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLG 76 DW+ LR F S AA+ LG+ H+TVSRR++ E + LF R +LT G Sbjct: 3 DWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADG 62 Query: 77 ETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLD 136 ++ A ++++ L G + ++ G++R+ +TE T LAP + R P + Sbjct: 63 YRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHIT 122 Query: 137 IEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAEWRARAAPG 196 ++ + V+L++ +AD+++ RP G+ + KL L SR+ +A+ Sbjct: 123 VDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQ-------- 174 Query: 197 SAPFIGXRARAAPGSAPFIGFDDGVPDIPETQWLADHAGGNPVR-FRSTSLVTQCMAARA 255 P I A FIG+ D + E ++ D + R FRSTS+V Q AA A Sbjct: 175 -HPPIHTMDDLAQHH--FIGYIDDLVFSEELRY-KDTVAPDAFRAFRSTSVVAQYTAACA 230 >gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 110/245 (44%), Gaps = 22/245 (8%) Query: 9 NSPALLAADWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGD 68 N+P + W+ +R F GS S +ARVL V H+TV+R + LE L LF R Sbjct: 17 NTP-MNTLQWDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFDRLAR 75 Query: 69 DTELTRLGETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPAL 128 LT G + A +++ + L R A + + GK+R+++ + + FL PRLPA Sbjct: 76 GWVLTTEGAELSKQAEQLEVEMHSLWRA-ALANTTLSGKVRVSAPPILMSDFLVPRLPAF 134 Query: 129 LERWPQLDIEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAE 188 E++P +++E + V L R +AD+A+R P L+AR L +SY + G + Sbjct: 135 QEKYPDIELEVIGEARGVDLTRGEADIALRMGEPVSPLLVARMLCNVSYSVYG----IPA 190 Query: 189 WRARAAPGSAPFIGXRARAAPGSAPFIGFDDGVPDIPETQWLADHAGGNPVRFRSTSLVT 248 W R P S FIG D P + WL R+ + Sbjct: 191 WLER--PES-------------ERSFIGLDQESP-CRQKAWLESQVDQRRYALRTNDIRA 234 Query: 249 QCMAA 253 C AA Sbjct: 235 MCHAA 239 >gi|300310322|ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 97/181 (53%), Gaps = 1/181 (0%) Query: 17 DWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLG 76 DW+ R F A G+ GAA L + ATV RRL LE +L LF R + T G Sbjct: 2 DWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPAG 61 Query: 77 ETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLD 136 E +AA++M+ QL R++ G D R+ G +R+A+T+ A FL P L L + P + Sbjct: 62 EMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHIR 121 Query: 137 IEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFLCGSRERVAEWRARAAPG 196 + S S Q +L +R+AD+A+R RP DLIAR L ++ + SR V + R PG Sbjct: 122 VVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKK-RGLPEPG 180 Query: 197 S 197 + Sbjct: 181 T 181 >gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 87/163 (53%) Query: 17 DWEGLRTFAAFIESGSFSGAARVLGVTHATVSRRLQTLEHALHGPLFTRRGDDTELTRLG 76 +WE R+F +E+GS S A R +G+T TV R ++ LE L LF R D T Sbjct: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 Query: 77 ETVLSAAREMQAQTAQLARRLAGEDIRMEGKLRIASTEAMATMFLAPRLPALLERWPQLD 136 + A + A +A L R + + + G +R+ ++E ++ L P L AL R P+L Sbjct: 67 LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126 Query: 137 IEFSMSHQTVSLARRDADLAIRFARPQDGDLIARKLGKISYFL 179 +E +S++ L +R+AD+A+R RP L+A++LG I L Sbjct: 127 VELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGL 169 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 984,228 Number of extensions: 33558 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 43 Length of query: 375 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 288 Effective length of database: 1,207,925 Effective search space: 347882400 Effective search space used: 347882400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 131 (55.1 bits)