BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0036.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein [He...   194   3e-51
gi|300310740|ref|YP_003774832.1| isochorismatase family protein ...    55   3e-09
gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoa...    55   4e-09

>gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  194 bits (494), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 127/199 (63%), Gaps = 36/199 (18%)

Query: 13  MSIPKTLLQIAGAAPRXARAR------------------------------------ARA 36
           MS P+TL+QIAG +PR A  +                                    ARA
Sbjct: 1   MSTPQTLIQIAGGSPRAATWQEAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARA 60

Query: 37  AGAPVFHVVHHAKPGAVLFDPQREFVGIIDGLQPQDGEVTVVKALPNSFAGTTLDAELKK 96
           A APV HVVHH KPG  +FDPQ   V IIDG+QPQ GE  + K LPNSFAGTTLD  LKK
Sbjct: 61  AAAPVIHVVHHGKPGGAMFDPQGPHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKK 120

Query: 97  AGKKELIIAGFATHMCISATTRSALDHGYASTVVAAACATRDLPDALGKGVVPAAEVQRA 156
            G+K LIIAGFATHMC+SAT RSALDHGYA TVVAAACATRDLPD LG   + AAE+QR 
Sbjct: 121 TGRKSLIIAGFATHMCVSATVRSALDHGYACTVVAAACATRDLPDPLGGPALSAAEIQRV 180

Query: 157 ALAALADRFATVVPDAAAL 175
           ALA LADR+ATVV  A  L
Sbjct: 181 ALAELADRYATVVAHAGLL 199


>gi|300310740|ref|YP_003774832.1| isochorismatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score = 55.1 bits (131), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 64  IIDGLQPQDGEVTVVKALPNSFAGTTLDAELKKAGKKELIIAGFATHMCISATTRSALDH 123
           I+  L P  GE+ + K    +F  T L A+L++ G   L++AG  T +C+  + R A D 
Sbjct: 114 ILPQLTPMAGEIVIDKPGKGAFYATDLHAQLQERGITHLLVAGVTTEVCVQTSMREANDR 173

Query: 124 GYASTVVAAACAT 136
           GY   VV  ACA+
Sbjct: 174 GYECLVVEDACAS 186


>gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 25/156 (16%)

Query: 28  RXARARARAAGAPVFH-------------VVHHAKPGAVLFDPQREFVGIIDGLQPQDGE 74
           R   A AR  G PV H             +     PG V          I+  L P +GE
Sbjct: 53  RSLLAHARQQGWPVAHSRIVFADDDADRNIFGMKVPGMVTLKEDLPGSAIVPQLAPANGE 112

Query: 75  VTVVKALPNSFAGTTLDAELKKAGKKELIIAGFATHMCISATTRSALDHGYASTVVAAAC 134
           + V K +P++F GT+L   L + G + L++AG  T  C+ A+   A+  G+   VV+   
Sbjct: 113 LVVRKTVPSAFFGTSLAPWLTQHGVQTLLVAGAVTSGCVRASVVDAMSWGFRPLVVSDCV 172

Query: 135 ATRDLPDALGKGVVPAAEVQRAALAALADRFATVVP 170
             R    ALG           A L  +A ++A V+P
Sbjct: 173 GDR----ALGP--------HEANLFDMAQKYAAVMP 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 433,729
Number of extensions: 14661
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)