BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0010.p
         (351 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein [He...   487   e-139

>gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  487 bits (1254), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/365 (73%), Positives = 285/365 (78%), Gaps = 26/365 (7%)

Query: 1   VLHGDRYPSYALSLDLDPALVDVNVHPSKIEVRFRDSRSVHQFVFHAVSRALAATSATSF 60
           VLHGDRYP+YALSL LDPALVDVNVHPSKIEVRFRDSR+VHQFVFHAVSRALA TSA SF
Sbjct: 275 VLHGDRYPAYALSLTLDPALVDVNVHPSKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSF 334

Query: 61  GNAP--APQAASNGPLP---------WMRDQQGQPQPQYQNAFGAQL-RPNFSAGN--FG 106
           GN P  APQ+  +   P         W+    G+ Q Q  +A  A+  RP    GN  FG
Sbjct: 335 GNLPGAAPQSDDSAGAPPPAANAPLPWI----GEQQQQSFSAQFAEAPRPFSFGGNSGFG 390

Query: 107 VAQNTAEYGAMFQPGVQTNLDMASTFGSEAAPGAFVMPVSAGAPMQTLPADDFPLGFALA 166
           V QNT  YG+MF+         A T G            +  A    LP  DFPLGFALA
Sbjct: 391 VRQNTEAYGSMFRS--------APTSGEPDGSAPAAYGATPAAAPAALPEGDFPLGFALA 442

Query: 167 QLHGIYVLAQNSKGLVVVDMHAAHERILYEQLKNALDDNSMFVQPLLIPVTFYADAVEVG 226
           QLHGIYVLAQN  GLVVVDMHAAHERILYEQLK ALD N MFVQPLLIPVTFYAD VEVG
Sbjct: 443 QLHGIYVLAQNQAGLVVVDMHAAHERILYEQLKTALDGNEMFVQPLLIPVTFYADPVEVG 502

Query: 227 TVEEHQETLSALGFDIAAMSPTTLAVRAVPALLKNADAQTLARDVLRDVREFGGSRVLLE 286
           TVEEHQETLSALGFDIA MSPTTLAVRAVPALLKNADAQTLARDVLRDVRE+GGSRVLLE
Sbjct: 503 TVEEHQETLSALGFDIAVMSPTTLAVRAVPALLKNADAQTLARDVLRDVREYGGSRVLLE 562

Query: 287 RRNELLGTLACHTAVRANRSLTVPEMNALLRQMEATERADQCNHGRPTWSQLALSDMDKL 346
           RRNELLGTLACHTAVRANRSLT+PEMNALLRQMEATER+DQCNHGRPTW+Q+ LSD+DKL
Sbjct: 563 RRNELLGTLACHTAVRANRSLTLPEMNALLRQMEATERSDQCNHGRPTWTQMGLSDLDKL 622

Query: 347 FLRGQ 351
           FLRGQ
Sbjct: 623 FLRGQ 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,011
Number of extensions: 41765
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,212,660
Effective search space: 321354900
Effective search space used: 321354900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)