BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0008.p (723 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 809 0.0 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 400 e-112 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 399 e-112 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 395 e-111 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 389 e-109 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/661 (64%), Positives = 537/661 (81%), Gaps = 19/661 (2%) Query: 4 SAFHYRSWAVGTKLTSLTLALVGTLFVAAILLIDLTTSAMLEQRSMNQISGETRAVVNMV 63 S FH +VG KLT++T+ALVG +FV A+LLI + S M+EQRS+ Q+ +TR + NMV Sbjct: 12 SLFHR---SVGAKLTAMTVALVGIVFVIALLLITYSASRMIEQRSVEQMRNDTRGIANMV 68 Query: 64 EMFDRSVNSQVERFSNMFSNAFPGKFTLDASRTVQIGDKATPVLRNGDTDLNLDFSIPDR 123 +FDRSVNSQV+RFS MF + F GK +LD +RTVQIG++ATPVL+N +LNLDFSIPDR Sbjct: 69 GLFDRSVNSQVDRFSTMFDSEF-GKLSLDETRTVQIGERATPVLQNDGHELNLDFSIPDR 127 Query: 124 FTAQTGVTATIFAKSGDDFVRVSTSVKKEDGERAVGTMLDRAHPGYAALKADKSYSGIAT 183 FTA+TGVTATIFAK+G+DFVR+STSVKKE+GERA+GT+LDR+HPGYAALK+DK+YSG+AT Sbjct: 128 FTAKTGVTATIFAKTGEDFVRISTSVKKENGERAIGTLLDRSHPGYAALKSDKAYSGLAT 187 Query: 184 LFGKQYITKYVPIKDAAGQLIGVLYVGVDISDDIKALKDKIKALKIGETGFFYVLNAKEG 243 LFGKQYITKYVP+K+ AGQ+I LYVG+DIS DIKALKD+IKALKIG+TG F+ LNA+EG Sbjct: 188 LFGKQYITKYVPVKNNAGQIIAALYVGIDISSDIKALKDQIKALKIGDTGNFFALNAREG 247 Query: 244 KDFGTLLAGP----KDEGKNLLGLKDVDGKEFIKDMLAKKQGVMRYMWDNPDTAGHSGEE 299 KD G ++AG K+EG +LL LKD G +IK ML +K G + P TA G + Sbjct: 248 KDLGVMIAGAAREGKEEGSSLLELKDAAGDTYIKTMLQQKDGSL------PYTAA-DGRK 300 Query: 300 KIVAFSQFPAWNWVIVGETYTNEVTREIAAMRNRFMLFGAAFLLLVGVVLTMVIKRVVTR 359 KI+AF+ +P W+WVI GE +E+TRE+++MRN ++ G FL ++ +LT+++ R+V+R Sbjct: 301 KILAFTYYPGWHWVIAGEAAVDEITREVSSMRNLYIGLGLLFLAVLAAILTVMVNRMVSR 360 Query: 360 PLARAREXAAADMLASGDLTARVRVSDGQQDEIGQLMRAVNGISEGLAHVVADVRQGTEQ 419 PL + AAD +ASGDLT R+ V DEIG+LM A NGIS GL+ VV+ VR GTE+ Sbjct: 361 PLDAVCQ--AADRIASGDLTTRLHVHS--SDEIGRLMGAFNGISMGLSEVVSSVRAGTEE 416 Query: 420 ITTASSEIATGNLDLSSRTEQQAGSLEETASAMEELTSTVKQNADNAGQANQLALSASEV 479 I TA+SEIA+GNL+LS RTEQQAG+LEETASAMEELTSTVKQNA NA QA++L+ +ASEV Sbjct: 417 INTAASEIASGNLNLSVRTEQQAGALEETASAMEELTSTVKQNAANAEQADELSSAASEV 476 Query: 480 ASQGGAVVGKVIDTMGSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 539 AS GG VVG+V+ TM +IN SS++IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 477 ASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 536 Query: 540 AVVASEVRSLAQRSAAAAKEIKGLIDDSVEKVEAGSKLVEQAGATMGEVVASVKRVTDIV 599 AVVA+EVR+LAQRSAAAAKEIK LID SV+ V G +LV QAG TM +VV+SV+RV+ ++ Sbjct: 537 AVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRVSTVI 596 Query: 600 GEISSASQEQRAGIEQVNHAIVQMEQTTQQNAALVEQAAAAAQSLQDQAHKLTASVSTFK 659 EI++AS+EQ GI+Q+N AI QM+++TQQNAALVEQAAAAAQSLQ QA +L A+VSTF+ Sbjct: 597 SEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAVSTFR 656 Query: 660 L 660 + Sbjct: 657 I 657 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/413 (59%), Positives = 307/413 (74%), Gaps = 17/413 (4%) Query: 322 EVTREIAAMRN---RFMLFGAAFLLLVGVVLTMVIKRVVTRPLARAREXAAADMLASGDL 378 E E AA+R+ ++ G A L++ V+L + +TRPLA A + A +ASGDL Sbjct: 179 ERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLA--RRVASGDL 236 Query: 379 TARVRVSDGQQDEIGQLMRAVNGISEGLAHVVADVRQGTEQITTASSEIATGNLDLSSRT 438 TAR+ V +DE G L+ A+ ++E L +V+ VR+GTE I TASSEIATGNLDLSSRT Sbjct: 237 TARIEVRS--RDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRT 294 Query: 439 EQQAGSLEETASAMEELTSTVKQNADNAGQANQLALSASEVASQGGAVVGKVIDTMGSIN 498 EQQA SLEETAS+MEELTSTV+QN NA +AN++A +AS++AS GG VV +V+DTM IN Sbjct: 295 EQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEIN 354 Query: 499 ESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 558 +SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK Sbjct: 355 DSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 414 Query: 559 EIKGLIDDSVEKVEAGSKLVEQAGATMGEVVASVKRVTDIVGEISSASQEQRAGIEQVNH 618 EIK LI DSV KVE+GS LV +AG TM E+V SV+RVT+++ EIS+A +EQR+GIEQV+ Sbjct: 415 EIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQ 474 Query: 619 AIVQMEQTTQQNAALVEQAAAAAQSLQDQAHKLTASVSTFKLDETHAMEFG-----AAGT 673 A+ QM+Q TQQNAALVEQAAAA+QSLQ+QA +L +VS F+L+ A+E A+ Sbjct: 475 AVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVA 534 Query: 674 GTAAPVRKLVARTS--PAP-KPAAAPKAAPVAKLPPSGKSLPAPSKDDDWEQF 723 + + VR R+S P+P P+A+P A+P+ P SG L + + D+W F Sbjct: 535 ASRSGVRP-ATRSSRLPSPVGPSASPSASPMHPAPASGSRL-SSADADEWVTF 585 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 242/397 (60%), Positives = 299/397 (75%), Gaps = 19/397 (4%) Query: 336 LFGAAFLLLVGVVLTMV---------IKRVVTRPLARAREXAAADMLASGDLTARVRVSD 386 ++G A + ++ +V T V I R+V RPLA A + A +A+GDLTA + Sbjct: 185 IYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIA--RQVAAGDLTADI--PT 240 Query: 387 GQQDEIGQLMRAVNGISEGLAHVVADVRQGTEQITTASSEIATGNLDLSSRTEQQAGSLE 446 +DE GQL+ A+ ++ L ++V +VRQGT+ ITTAS+EIATGN+DLSSRTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 447 ETASAMEELTSTVKQNADNAGQANQLALSASEVASQGGAVVGKVIDTMGSINESSRKIVD 506 ETASAMEELTSTV+QN+DNA QANQLA++ASEVA GG VVGKV+ TM +IN+SSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 507 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKGLIDD 566 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 567 SVEKVEAGSKLVEQAGATMGEVVASVKRVTDIVGEISSASQEQRAGIEQVNHAIVQMEQT 626 SV KV+ GSKLV++AG TM EVVASVKRV+DIV EI++A EQ GIEQ+N+A+VQM++ Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 627 TQQNAALVEQAAAAAQSLQDQAHKLTASVSTFKLDETHAMEFGAAGTGTAAPVRKLVART 686 TQQNAALVEQAAAAA++LQ+QA +L+ +VS F+LD H + TA P R + Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDI---- 536 Query: 687 SPAPKPAAAPKAAPVAKLPPSGKSLPAPSKDDDWEQF 723 +PA +PA A + V P + A ++ DWEQF Sbjct: 537 TPA-RPALAQSRSKVMARPAHSNT-SASAEQGDWEQF 571 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/410 (60%), Positives = 299/410 (72%), Gaps = 6/410 (1%) Query: 316 GETYTNEVTREIAAMRNRFMLFGAAFLLLVGVVLTMVIKRVVTRPLARAREXAAADMLAS 375 G +N+ I A +++ A + + ++L + + R++ RPL A + A +A Sbjct: 174 GADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEA--VSVAQRVAG 231 Query: 376 GDLTARVRVSDGQQDEIGQLMRAVNGISEGLAHVVADVRQGTEQITTASSEIATGNLDLS 435 GDLT R+ + +DE GQL+ A+ +++ L +V VR GT+ ITTAS+EIA+GNLDLS Sbjct: 232 GDLTTRIEPAG--KDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLS 289 Query: 436 SRTEQQAGSLEETASAMEELTSTVKQNADNAGQANQLALSASEVASQGGAVVGKVIDTMG 495 SRTE+QA SLEETASAMEELTSTVKQNADNA QANQLA+SASEVASQGGAVV +V+DTMG Sbjct: 290 SRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMG 349 Query: 496 SINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 555 SIN SSRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA Sbjct: 350 SINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAG 409 Query: 556 AAKEIKGLIDDSVEKVEAGSKLVEQAGATMGEVVASVKRVTDIVGEISSASQEQRAGIEQ 615 AAKEIK LI+ SV +V+ GSKLVE+AG TM EVV SV+RVTDIVGEISSASQEQ GIEQ Sbjct: 410 AAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQ 469 Query: 616 VNHAIVQMEQTTQQNAALVEQAAAAAQSLQDQAHKLTASVSTFKLDETHAMEFGAAGTGT 675 VN AI QM++ TQQNAALVE+AAAAAQSLQ+QA LT +V FKL++ Sbjct: 470 VNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRA 529 Query: 676 AAPVRKLVARTSPAPKPAAAPKAAPVAKLPPSGKSLPAPSKDD--DWEQF 723 A+ R R +PA +PAA A+ P SG LP + +D WEQF Sbjct: 530 ASVARTAAVRHAPATRPAATLAASAAPAKPASGSRLPGGAAEDGGSWEQF 579 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 389 bits (998), Expect = e-109, Method: Compositional matrix adjust. Identities = 224/338 (66%), Positives = 273/338 (80%), Gaps = 11/338 (3%) Query: 343 LLVGVVLTMVIKRVVTRPLARAREXAAADMLASGDLTARVRVSDGQQDEIGQLMRAVNGI 402 +L ++L ++ R + +PL A A+ +A+GDLT R+ +DE GQLM+A+ + Sbjct: 203 VLAAIILGYLMARSIVKPLTEA--VRVAENVAAGDLT--TRIEPHSRDETGQLMQALRKM 258 Query: 403 SEGLAHVVADVRQGTEQITTASSEIATGNLDLSSRTEQQAGSLEETASAMEELTSTVKQN 462 ++ L +V+ VR+GTE ITTAS EIA+GNLDLS+RTEQQAGSLEETASAMEE+TSTV+QN Sbjct: 259 NDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQN 318 Query: 463 ADNAGQANQLALSASEVASQGGAVVGKVIDTMGSINESSRKIVDIISVIDGIAFQTNILA 522 ADNA QANQ+A+SASE+A QGG +VG+V+ TM IN+SSRKIVDII VIDGIAFQTNILA Sbjct: 319 ADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILA 378 Query: 523 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKGLIDDSVEKVEAGSKLVEQAG 582 LNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI DSV KVE GS LV QAG Sbjct: 379 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAG 438 Query: 583 ATMGEVVASVKRVTDIVGEISSASQEQRAGIEQVNHAIVQMEQTTQQNAALVEQAAAAAQ 642 ATM +VV+SV+ VTDIV EIS+AS EQ +GIE++N A+ QM++ TQQNAALVEQAAAAA+ Sbjct: 439 ATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAK 498 Query: 643 SLQDQAHKLTASVSTFKLDETHAMEFGAAGTGTAAPVR 680 S+Q+QA +LT S+S FKL++ GAA AAPVR Sbjct: 499 SMQEQAVRLTQSISIFKLEQ------GAASI-PAAPVR 529 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,731,849 Number of extensions: 61450 Number of successful extensions: 627 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 72 Length of query: 723 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 631 Effective length of database: 1,184,250 Effective search space: 747261750 Effective search space used: 747261750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)