BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0007.p (988 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodies... 1387 0.0 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 369 e-103 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 367 e-102 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 360 e-100 gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 340 3e-94 >gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum seropedicae SmR1] Length = 1002 Score = 1387 bits (3589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 650/973 (66%), Positives = 789/973 (81%) Query: 10 ELQQCRSSLEEKEALLAAFSRSMAILELAPDGTILSANDNFLTLMAYRHSDIVGHHHRML 69 E+ R S E++ALLAA RSMAILE + DGT+L AN+NFL ++ YR +D+VG HHRML Sbjct: 10 EVDHQRLSGSERDALLAALWRSMAILEFSADGTVLEANENFLAMLGYRRADVVGQHHRML 69 Query: 70 CNPTHAGSPEYAEFWRRLHQGEVVSGTLQRMRSDGSRLWLEATCNPVFDAEGRLLRVVSI 129 C+P + + Y +FW L +GE+++GTLQR G+ +WLEA C+P+ DA+G+LL+V+S+ Sbjct: 70 CDPAYVQTDAYQQFWEHLRKGELIAGTLQRRHVGGATVWLEALCSPILDAQGQLLKVISV 129 Query: 130 AADITAHIDDSQEKHSVLRALNRSLGVIEFSADGIIVGANGNYLKTMGYLPEEIVGKHHR 189 AADI+AHIDDS+ +S+L ALNRSLGV+E S +G+I+ ANGNYLKTM YL E+++G+ H Sbjct: 130 AADISAHIDDSRHSNSILSALNRSLGVVELSPEGVILAANGNYLKTMEYLAEDLLGQPHS 189 Query: 190 FLCEPDYVDSQEYENFWRDVNQGRFFSGRFKRIARDGRPVWWEATYTPVFDLEGEPIKII 249 LCE DY S+EY FWRDV+ GRFFSGRF R R GR +WWEATY+P+ D G+ ++I Sbjct: 190 ILCEADYAASEEYTCFWRDVSLGRFFSGRFPRRTRSGRTIWWEATYSPLLDAHGKAERVI 249 Query: 250 SIGSDVSYRMVREQRDREYQHLLSLGINETDNAVFITNDANHIVFHNTGFSRMLGFTAEE 309 IG+DV+YR+ RE+ DRE+ HLLSLGINETDNAV IT+D N IVFHNTGF+RMLGF +++ Sbjct: 250 CIGTDVTYRVTREKSDREHLHLLSLGINETDNAVLITDDQNRIVFHNTGFTRMLGFESQQ 309 Query: 310 VIGRRPRELFEGQTAILKLIEDCYAVIAEGRSFHGEEMMVDKQGHPLWVSTVVNPILDGD 369 VIGR P ELF + +K +E C+ + +GRS+H EE++ D Q P+W+S VVNPILDG Sbjct: 310 VIGRLPGELFASRPTFVKSLERCHGELVQGRSYHTEELIHDMQEQPVWISAVVNPILDGA 369 Query: 370 GKLINAVCILTDITNTKMHEVLQYKTLNAMVREASLQEVLTMVCVELERIAPDIVASILR 429 GKLI+AVC++TDITNTK+HEVLQY+ LNAM R++SL E + ++C E+ER+AP+++AS+LR Sbjct: 370 GKLIHAVCVMTDITNTKVHEVLQYRVLNAMARDSSLSEQMNLLCEEVERVAPEVIASVLR 429 Query: 430 VDENGLLHPVAGPSLPDAYNRAIEGVAIGPCVGSCGTAAFRAEPVEVVDIATDPLWSDYR 489 VDE+G L +A PSLP+AY++AI+G+ +GP VG CG+AA+ + V DI TDP W+DY+ Sbjct: 430 VDEHGCLRTLAAPSLPEAYSKAIDGLHVGPMVGCCGSAAYTGQTVISEDIQTDPHWNDYK 489 Query: 490 DLLLPTGLESCWSTPIKSADGRVIGTFAFYYHGKRRPDPFHHRLVDVSLHLCALALEREE 549 L LP GL +CWSTPIKSA G+VIGTF FYY +P FHH LV+ LHLCALA+ERE+ Sbjct: 490 HLALPHGLRACWSTPIKSASGQVIGTFGFYYRHPGQPSAFHHLLVEAGLHLCALAIERED 549 Query: 550 ARSRIHRLAFYDSLTGLPNRSLLLVSANQAIANAARTQIPLAVLFIDLDRFKQINDSLGH 609 AR+RIH+LAFYDSLTGLPNRSLLLV A QAIA A R +AV+FIDLDRFKQ+NDSLGH Sbjct: 550 ARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCSTVAVMFIDLDRFKQVNDSLGH 609 Query: 610 QAGDELLCTVASRLQTEARKSDIVGRLSGDEFVIVLAQCDLNRVTDVVKRIQTSLSMPCH 669 QAGDELL TVA+RLQ++AR+SDIVGRLSGDEFV+VL Q D +T+VVKRIQ L+MPCH Sbjct: 610 QAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQYDTQHLTEVVKRIQERLAMPCH 669 Query: 670 IAGVTLTPSASIGISLFPDNGETIEILLHRADMAMYQTKANNRDRFSFFSDEMNTQAQER 729 I G L PSASIG+++FPDNG IE LLHRAD+AMYQ KA NR RFSFFS+EMN+ AQER Sbjct: 670 INGTPLNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFSEEMNSMAQER 729 Query: 730 LALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPARFIPIAEEC 789 LALE ALRDALRGGD EL++QPQI H LHGVEALARWHH QLGQISP RFIPIAEEC Sbjct: 730 LALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGRFIPIAEEC 789 Query: 790 GLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGLLQRFALAP 849 GLIGELGKWALEEACFQL DWRRRGI VPS+SVNLS+TNFHDL+LPQF+ GLL+R+AL P Sbjct: 790 GLIGELGKWALEEACFQLSDWRRRGIQVPSISVNLSATNFHDLDLPQFVTGLLRRYALEP 849 Query: 850 GDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLPVCELKLDQ 909 DLTLEITETV+MDTNPST++TI VHA G+ LAMDDFGTGYSSLGYLR LPV ELKLDQ Sbjct: 850 SDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLPVSELKLDQ 909 Query: 910 SFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVAQGYLFSRP 969 SFVRDM +D V ALTNAVIRIGESL L VVAEGVED QY LL QGCDVAQGYLFSRP Sbjct: 910 SFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVAQGYLFSRP 969 Query: 970 MLATVFEHWLKNF 982 M A E+W+++ Sbjct: 970 MSADALENWVRDL 982 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 369 bits (946), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/675 (33%), Positives = 353/675 (52%), Gaps = 22/675 (3%) Query: 327 KLIEDCYAVIAEGRSFHGEEMMVDK------QGHPL---WVSTVVNPILDGDGKLINA-- 375 ++I + + +S H E+ +D+ G P WV+ N I+ D L A Sbjct: 418 RIIGRKVGLFSRQKSRHMEQPDIDELVARVLSGQPQQFEWVTVRRNKIIHTDVTLNRAEF 477 Query: 376 ------VCILTDITNTKMHEVLQY---KTLNAMVREASLQEVLTMVCVELERIAPDIVAS 426 IL DI+ K E+LQ + L+ ++ + L VL + + P S Sbjct: 478 ERGYAIFAILRDISARKRAELLQSEQNRVLHMVMADDELDGVLYEIVNFADAQIPYGACS 537 Query: 427 ILRVDENGL-LHPVAGPSLPDAYNRAIEGVAIGPCVGSCGTAAFRAEPVEVVDIATDPLW 485 ++ V+E V P RA++G+ I G AA R P V +IA DP+ Sbjct: 538 VMLVNEQASHFTSVLSHRYPPRLIRALQGMPIRHGCGVGAEAALRRGPCIVANIAQDPIT 597 Query: 486 SDYRDLLLPTGLESCWSTPIKSADGRVIGTFAFYYHGKRRPDPFHHRLVDVSLHLCALAL 545 R L+ SC + PI +G+++G FA + P + +L +++ L ++A+ Sbjct: 598 EHLRPLIDTEIYPSCGAWPIIGKEGQLLGVFAALLKENQAPSNEYLQLANIAADLASVAI 657 Query: 546 EREEARSRIHRLAFYDSLTGLPNRSLLLVSANQAIANAARTQIPLAVLFIDLDRFKQIND 605 E A RI LA YD LTGLPNR L + AI +A +AV+ +DLDRFK IND Sbjct: 658 ESRRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNIND 717 Query: 606 SLGHQAGDELLCTVASRLQTEARKSDIVGRLSGDEFVIVLAQCD-LNRVTDVVKRIQTSL 664 + GH+ G+ +L +A R + R+ DI+ R+ GDEF++++ D ++ ++ +++ T Sbjct: 718 TFGHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTEA 777 Query: 665 SMPCHIAGVTLTPSASIGISLFPDNGETIEILLHRADMAMYQTKANNRDRFSFFSDEMNT 724 P I G S SIGI+ +P +G+ + L+ AD+AMY+ K + +D + FFSDE+NT Sbjct: 778 RKPFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEINT 837 Query: 725 QAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPARFIP 784 ER+ALE LR A+ +F +HYQP+I G + G EAL RW H G + P FI Sbjct: 838 NTVERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFIT 897 Query: 785 IAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGLLQR 844 +AEE LI ++G L+ AC + R++ + +S+NL+ + F D L I ++ R Sbjct: 898 LAEETRLIDQIGLLVLDVACRDIGLMRQQQMTCGRISINLTGSQFGDERLLDDIKEVVDR 957 Query: 845 FALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLPVCE 904 P L EITE+++M + + A+G +++DDFGTGYSSL YL+ PV Sbjct: 958 HGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVNT 1017 Query: 905 LKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVAQGY 964 LK+D+SF+ D+ + A+ A+I + +L+L VV EGVE ++Q L++ G D QGY Sbjct: 1018 LKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQGY 1077 Query: 965 LFSRPMLATVFEHWL 979 FS+P+ F L Sbjct: 1078 YFSKPVPYAQFVQLL 1092 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/442 (45%), Positives = 275/442 (62%), Gaps = 3/442 (0%) Query: 544 ALEREEARSRIHRLAFYDSLTGLPNRSLLLVSANQAIANAARTQIPLAVLFIDLDRFKQI 603 +++R EA A D+LTGL NR +L QAI A R + L V+F+DLDRFK + Sbjct: 507 SMKRYEAELEFQ--ASRDTLTGLINRHMLRHHLEQAIGVAERQKQALWVVFVDLDRFKFV 564 Query: 604 NDSLGHQAGDELLCTVASRLQTEARKSDIVGRLSGDEFVIVLAQCD-LNRVTDVVKRIQT 662 ND+LGH+AGD LL TVA RL+ R++D V RL GDEF+++L + D L T ++RI Sbjct: 565 NDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMD 624 Query: 663 SLSMPCHIAGVTLTPSASIGISLFPDNGETIEILLHRADMAMYQTKANNRDRFSFFSDEM 722 +++ P + G TL + S+G++ +P++G E L+ AD+AMY+ K R+ F F++ M Sbjct: 625 AVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAM 684 Query: 723 NTQAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPARF 782 N QA ERL +EG LR+AL G+F LHYQP+++ +G + G EAL RW H QLG +SPARF Sbjct: 685 NEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARF 744 Query: 783 IPIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGLL 842 I +AEE GLI +G W L AC Q W+ G SVSVNLS F +L IA +L Sbjct: 745 IGLAEETGLILPIGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVL 804 Query: 843 QRFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLPV 902 + L P L LE+TE++MM + + GV+L++DDFGTGYSSL YL+ P+ Sbjct: 805 EDTGLPPESLELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPI 864 Query: 903 CELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVAQ 962 LK+D+SFVRD+ D A+T ++I + L L V+AEGVE Q D L+ GCD Q Sbjct: 865 DVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQ 924 Query: 963 GYLFSRPMLATVFEHWLKNFKI 984 GYLFS P+ A FE L+ ++ Sbjct: 925 GYLFSPPVPADKFEQILRQDRV 946 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/436 (44%), Positives = 266/436 (61%), Gaps = 3/436 (0%) Query: 546 EREEARSRIHRLAFYDSLTGLPNRSLLLVSANQAIANAARTQIPLAVLFIDLDRFKQIND 605 ER+ + + A +D+LTGLPNR++L +A+ A + AV F+DLD+FK IND Sbjct: 254 ERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFIND 313 Query: 606 SLGHQAGDELLCTVASRLQTEARKSDIVGRLSGDEFVIVLAQCDLNR--VTDVVKRIQTS 663 SLGHQ GDELL TVA RLQ R++D+V R GDEFV+VL + +V++RI + Sbjct: 314 SLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQRILAA 373 Query: 664 LSMPCHIAGVTLTPSASIGISLFPDNGETIEILLHRADMAMYQTKANNRDRFSFFSDEMN 723 ++ P +ASIG+S +P +G+ +E LL AD AMY+ K R+ F FF+ M+ Sbjct: 374 VARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMD 433 Query: 724 TQAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISPARFI 783 +Q RL + LR AL +F+L+YQP+++ G L G EAL RW Q G + P RFI Sbjct: 434 SQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFI 493 Query: 784 PIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIAGLLQ 843 P AEE GLI +G+W L AC Q W++ G+ V+VNLS + LP F+AG+L Sbjct: 494 PFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQ-SLPDFVAGVLA 552 Query: 844 RFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRNLPVC 903 + LA L LEITE V+M + T+ + G+++++DDFGTGYSSL YLR PV Sbjct: 553 QSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVD 612 Query: 904 ELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCDVAQG 963 LK+D+SFVRD+ RD A+ A+I + L+L V+AEGVED+ Q+ LK+ CD QG Sbjct: 613 ALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQG 672 Query: 964 YLFSRPMLATVFEHWL 979 Y F +PM VF W+ Sbjct: 673 YYFGKPMEVAVFTAWM 688 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 340 bits (872), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 190/436 (43%), Positives = 266/436 (61%), Gaps = 6/436 (1%) Query: 543 LALEREEARSRIHRLAFYDSLTGLPNRSLLLVSANQAIANAARTQIPLAVLFIDLDRFKQ 602 LA A + ++ +D LT LPNR+LL NQAI AAR Q A++F+DLD FK Sbjct: 251 LARSLAAANEELTQMVLHDQLTRLPNRTLLEDRLNQAINKAAREQGHFALMFMDLDGFKA 310 Query: 603 INDSLGHQAGDELLCTVASRLQTEARKSDIVGRLSGDEFVIVLAQCDLNRVTD---VVKR 659 INDSLGH GD LL VA RL + +R +D V RL GDEFVI++ DLN D V ++ Sbjct: 311 INDSLGHHVGDRLLVEVAQRLTSSSRANDTVARLGGDEFVILV---DLNTPEDAMGVAEK 367 Query: 660 IQTSLSMPCHIAGVTLTPSASIGISLFPDNGETIEILLHRADMAMYQTKANNRDRFSFFS 719 + +++ P + L SAS+GI+++P++G T L+ AD AMY TK + R+ + FF Sbjct: 368 LVEAVNQPFKVDQHELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRSGRNGYHFFE 427 Query: 720 DEMNTQAQERLALEGALRDALRGGDFELHYQPQINFHTGLLHGVEALARWHHDQLGQISP 779 MN AQ++L LR AL G F L YQP+ + G + G EAL RW H G ++P Sbjct: 428 PSMNANAQQQLQWLQDLRVALERGQFRLVYQPKFSLPAGPVLGAEALLRWEHPVHGLVAP 487 Query: 780 ARFIPIAEECGLIGELGKWALEEACFQLHDWRRRGINVPSVSVNLSSTNFHDLELPQFIA 839 +FI +AE GLI +G W L+EAC Q+ +W G ++SVNLS+ F D L + + Sbjct: 488 DQFIGLAERSGLILPIGAWVLDEACRQMREWFALGYVDWTMSVNLSALQFADPHLLEVVR 547 Query: 840 GLLQRFALAPGDLTLEITETVMMDTNPSTTRTIREVHAQGVKLAMDDFGTGYSSLGYLRN 899 L+R L P LTLE+TE+ M ++ +T+R++ GV++++DDFGTGYSSL YL+ Sbjct: 548 TTLERHQLPPPCLTLEVTESTAMHDTEASLQTLRQIADLGVEISIDDFGTGYSSLLYLKR 607 Query: 900 LPVCELKLDQSFVRDMDRDQTVLALTNAVIRIGESLDLIVVAEGVEDKRQYDLLKQQGCD 959 LP ELK+D+ FVR++ +D A+ +A++ +G +L+L +VAEGVE Q D L GCD Sbjct: 608 LPANELKIDRGFVRELRQDGEDAAIVSAIVALGRTLNLRIVAEGVETVEQQDFLTAAGCD 667 Query: 960 VAQGYLFSRPMLATVF 975 QGYL RPM +F Sbjct: 668 ALQGYLMGRPMTPELF 683 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,140,554 Number of extensions: 137908 Number of successful extensions: 549 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 483 Number of HSP's successfully gapped: 46 Length of query: 988 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 893 Effective length of database: 1,170,045 Effective search space: 1044850185 Effective search space used: 1044850185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)