BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0006.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   362   e-101
gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   194   7e-51

>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/216 (81%), Positives = 194/216 (89%)

Query: 1   MDYLQLLDVLLHVDKSLGLLIEQYGTMIYVVLFLIIFCETGLVVLPFLPGDSLLFIAGTF 60
           MDYLQLLDVL+HVDK LG+LIEQYG +IY VLFLI+FCETGLVVLPFLPGDSLLFIAGTF
Sbjct: 1   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 60

Query: 61  CATGAMNIWLLMFLLVVAAVTGNTLNYWIGSAIGHRVFTHNYRWLNPAALAKTHAFYEKH 120
           CATGAM+IWLLM LLVVAAV GNTLNYWIG  +G RV+THNYRWLNP AL KTHAFYEKH
Sbjct: 61  CATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTHNYRWLNPEALRKTHAFYEKH 120

Query: 121 GGKTIILARFTPIVRTFAPFIAGVSEMTFIRFQFFNIIGALLWVVGLLAFGYLFGNLPWV 180
           GGKTI++ARFTPIVRTFAPFIAGVS M+F RFQ FN++GA LWVVGL+  GYLFGN+P V
Sbjct: 121 GGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 180

Query: 181 RQNLNTLVLIGIVAAILPIVLGGLWQFYRKFLSRRQ 216
           +QNLNTLVLIGIVAA+ PIVLGGLWQ +RK   +R+
Sbjct: 181 QQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRK 216


>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  194 bits (492), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 144/211 (68%), Gaps = 7/211 (3%)

Query: 6   LLDVLLHVDKSLGLLIEQYGTMIYVVLFLIIFCETGLVVLPFLPGDSLLFIAGTFCATGA 65
           L+D ++H+D+ L  L   YG  ++++LFLIIFCETGLVV P LPGDSLLF+ G   ATGA
Sbjct: 7   LVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGALAATGA 66

Query: 66  MNIWLLMFLLVVAAVTGNTLNYWIGSAIGHRVFTH-NYRWLNPAALAKTHAFYEKHGGKT 124
            +I L++  L+VAA+ G++ NY IG  +G +VF   N R      L KTHAF+EKHGGK 
Sbjct: 67  YDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFEKHGGKA 126

Query: 125 IILARFTPIVRTFAPFIAGVSEMTFIRFQFFNIIGALLWVVGLLAFGYLFGNLPWVRQNL 184
           II+ARF PIVRTFAPF+AGV  MT+ RF  +N++G + WV      GY FGN+P V++NL
Sbjct: 127 IIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASFAYAGYFFGNMPIVKKNL 186

Query: 185 NTLVLIGIVAAILPIVLGGLWQFYRKFLSRR 215
           + L++  ++ +ILP    G+ ++ R    RR
Sbjct: 187 SLLIVAIVILSILP----GIIEYIRH--KRR 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.148    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,826
Number of extensions: 32239
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 128 (53.9 bits)