BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0003.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protei...   444   e-126

>gi|300310174|ref|YP_003774266.1| ferredoxin [4Fe-4S]-type protein
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  444 bits (1141), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/257 (82%), Positives = 230/257 (89%), Gaps = 2/257 (0%)

Query: 2   VSLYARGRDYHKVLRARLQQLAGRIEKEIGAFGYRVFTDSAPVMEVALAEKSGLGWRGKH 61
           VS+YARGRDYHKVLRARLQQLA RIE  IG FGYRVFTDSAPVMEVALAEK+GLGWRGKH
Sbjct: 90  VSIYARGRDYHKVLRARLQQLATRIEGRIGPFGYRVFTDSAPVMEVALAEKAGLGWRGKH 149

Query: 62  TLLLNREAGSMFFLGELFTDLALPVDEPVTPHCGQCSACIDVCPTQAIVAPYELDARRCI 121
           TLLL+REAGSMFFLGE+ TDL LPVD+PVTPHCGQCSACI  CPT AIVAPYELDARRCI
Sbjct: 150 TLLLHREAGSMFFLGEMLTDLPLPVDDPVTPHCGQCSACITACPTGAIVAPYELDARRCI 209

Query: 122 SYLTIELKGSIPVELRSLIGNRVYGCDDCQLYCPWNKFAQTSTLPDFDARHGLGSASLIE 181
           SYLTIELKGSIP ELR LIGNR+YGCDDCQLYCPWNKFAQ ++LPDFD RHGL SASL+ 
Sbjct: 210 SYLTIELKGSIPSELRPLIGNRIYGCDDCQLYCPWNKFAQRASLPDFDVRHGLDSASLVG 269

Query: 182 LLNWSEEDFNRNTEGSAIRRIGHERWLRNMAVGLGNA--AGTHKGDAEIVAALRPRLDHP 239
           L  WSEE+F +NTEGSAIRRIGHERWLRN+AVGLGNA  A +H+GDA IVAALR RL HP
Sbjct: 270 LFGWSEEEFLKNTEGSAIRRIGHERWLRNLAVGLGNAADAASHRGDAAIVAALRARLAHP 329

Query: 240 SELVREHVEWALAQHSL 256
           S LV EHV+WALA+H +
Sbjct: 330 SALVVEHVQWALARHGV 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 853,509
Number of extensions: 36120
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)