BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0001.p
         (633 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   219   5e-58

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  219 bits (558), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 255/547 (46%), Gaps = 89/547 (16%)

Query: 5   GLFFDGTSNNKYRDEPNQA--------HTNVVKLFNAHKDVKGEGYQKDSSCFRFYIPGV 56
           GLFFDGT NN    E  Q         H+NV +LF+A+ D        D+  FR Y+ GV
Sbjct: 48  GLFFDGTGNNDKWVEDGQTKNQRQRNKHSNVARLFDAYID------DPDNGFFRVYMQGV 101

Query: 57  GTRFPE-NQEWKETQE--GKAMGKGGQARILFGILQVYNAVYQAFNEGTRLFTDSELTAK 113
           GT F E    +K   +  G   G  G  RI +GI  + NAVY ++  G  LF+ +E    
Sbjct: 102 GTPFAEIGDTFKLGTDIGGSGFGYMGADRINWGITSLLNAVY-SYATGGSLFSGNEQRDL 160

Query: 114 LKSYTRDVESN-------------------YDKDYPQDERRKRWFTELRDELNDKLQTRR 154
           +   +  +  N                   Y    P+  RR   +     +L   +++ +
Sbjct: 161 VNLMSMQMLQNGNVNAMPPDWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQ 220

Query: 155 DMIIQPRIPKIRVAVFGFSRGAIEARSFCYWLHAALEEKS---TLAGMPIEINFLGLFDS 211
             ++Q     I V+VFGFSRGA EAR+ C+WLH           LAG+PI I FLG+FD+
Sbjct: 221 RKVVQ-----INVSVFGFSRGAAEARACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDT 275

Query: 212 VASVGLPHSAAQTTPFRFIDGHFSWAAETLTPLPSLVKQTVHYIAAHEQRMNFPVTCVQG 271
           VA+VG+       TP  F  GH +WA +T + +P  V+Q  H++A HEQR +FP+    G
Sbjct: 276 VAAVGI----GDVTPVTF--GHMAWADKTQS-VPPAVEQCAHFVALHEQRASFPLESSTG 328

Query: 272 SNVQEVLYPGVHADVGGGYCPREQGRGM-SVGQM--VSQVPLLHMHKIARLAGVPLMTYR 328
                V YPG+H+D+GGGY P EQG+ M S G+   +SQ+PL+ MH  A  AGVPL T  
Sbjct: 329 WT--NVGYPGMHSDIGGGYFPGEQGKSMPSWGKSPHLSQIPLIDMHFTALKAGVPLWTTG 386

Query: 329 QMSSD--LQADYALSPELAANWNAYMAA-GDFAGTYESQVREHMRMYYRFRYHWL----G 381
           ++++D  L A YA  P L  ++N ++A  G  AG+       H R Y R+R        G
Sbjct: 387 EINADPSLSASYATDPRLIKSYNDWLATNGIKAGSIREYTEAHTRQYLRWRGSLHEGKGG 446

Query: 382 RMAQLPACQRATSQEQQDMVSYDDLFKGDMELLRERAK-------GGPPRRY--RANGDE 432
            M      Q A + +++DM+  D      +   RERA        G   ++Y  R +   
Sbjct: 447 LMLGKRFYQDAGTSDKKDMLEADVELGKMIRDWRERASLNLDQRMGQMAQKYVRRVSPLT 506

Query: 433 IKFFAPGHSHIANREQLLRADMRQAPDDREALALQVFEEQRGQSKAEGIALLEEQVHDSL 492
                P    +  +E+     M   P                   A  + L E+ VHDS 
Sbjct: 507 GMLMGPSKDRLTAQEKKFYDIMCSDP----------------MPPAACVTLFEDYVHDSR 550

Query: 493 AGFYLGG 499
           AGF + G
Sbjct: 551 AGFRVMG 557


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,059,932
Number of extensions: 89826
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 542
Effective length of database: 1,188,985
Effective search space: 644429870
Effective search space used: 644429870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)