BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0028.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...    72   5e-14
gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...    55   5e-09

>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 13/234 (5%)

Query: 12  QLADAGNIDCHDGNLEQAQQRLAGKIADVMAQGVFPLVLGGGHEVAYGSFLGIMRHLGRS 71
           ++AD G++  +  +L  + + +      + A G   + LGG H +     L I+R L R 
Sbjct: 84  KVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTISLGGDHTLT----LPILRALARY 139

Query: 72  MSQRKLLIVNFDAHFDLRE---AERSTSGTPFKQIAEWCEWADVGFHYLCFGISQLGNTP 128
                L  ++ DAH D+ +    E+   GTPF++  E  E        +  G+   G   
Sbjct: 140 RGPVGL--IHVDAHADVNDTMNGEKIAHGTPFRRAFE--EGLLDPQRVVQIGLRGTGYHA 195

Query: 129 ALFTRAQQLGVEYVSDTDVATRSLAELDAQLRLRLEDVTDVYLTIDLDVLPGEKAPGVSA 188
             F   +  G   V   +   RSLA L  ++R ++ D   VYLT D+D L    APG   
Sbjct: 196 DDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGD-GPVYLTFDIDGLDPAFAPGTGT 254

Query: 189 PAAFGMALEKVEKLVSSIRASGKLIAADIAECNPVYDRDGMTAKVAARLAHLIL 242
           P   G+ +++  +++   +    +++AD+ E +P YD+ G TA VAA LA+ +L
Sbjct: 255 PEIGGLTVQQGLEIIRGCKGL-DIVSADVVEVSPPYDQAGTTALVAANLAYEML 307


>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 55.1 bits (131), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 36/233 (15%)

Query: 28  QAQQRLAGKIADVMAQGVFPLVLGGGHEVAYGSFLGIMRHLGRSMSQRKLLIVNFDAHFD 87
           Q  Q +   +A  +A G  PL++GG H +A GS   +  H  RS   ++L ++  DAH D
Sbjct: 71  QWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHC-RSQG-KELRVLWLDAHAD 128

Query: 88  LREAERSTSGTPFKQIAEWCEWADVGFHYLCFGISQL----GNTPALFTRA-QQLGVEYV 142
              ++ + +G     +   C         L  G + L    G TPAL  +   Q+G+  V
Sbjct: 129 ANTSQSTPTGN-IHGMPVAC--------LLGVGPAALTAIGGQTPALQPQQICQVGIRSV 179

Query: 143 SDTDVATRSLAELDAQ-----------LRLRLEDV-------TDVYLTIDLDVLPGEKAP 184
              +   R L EL  +           +R  +E+        T ++++ D+D L    AP
Sbjct: 180 DREE--KRHLRELGVRVFDMRHIDEYGMRQTMEEALAGVGPQTHLHVSFDVDFLDAALAP 237

Query: 185 GVSAPAAFGMALEKVEKLVSSIRASGKLIAADIAECNPVYDRDGMTAKVAARL 237
           GV      G    + +  +  I  +G L + D+ E NP  D    TA++   L
Sbjct: 238 GVGTAVPGGPTYREAQLCMEMIADTGALASLDVMELNPACDVRNQTAELVVDL 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,586
Number of extensions: 33382
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)