BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0025.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme...   102   4e-24
gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme...    66   6e-13
gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm...    56   6e-10
gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm...    53   5e-09

>gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  102 bits (255), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 70/73 (95%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           MIPPLGNEFIALIKNSALVSLLTIADLMHEG+KIISV+YRSLE Y+A+AL+YL+LTS+T+
Sbjct: 146 MIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISVTYRSLETYLAIALIYLLLTSVTT 205

Query: 61  MALQRVEKHLRAD 73
           + L+RVEK LR++
Sbjct: 206 LILRRVEKVLRSE 218


>gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 65.9 bits (159), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 52/71 (73%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           M+P +GN+FI  +K+++L  ++ + +L  +GQ+I++ ++R++E++IAVA +YL +  + +
Sbjct: 146 MVPAMGNQFIVSLKDTSLFIVIGVGELTRQGQEIMAANFRAVEIWIAVAAIYLCMIGVMT 205

Query: 61  MALQRVEKHLR 71
            AL+  EK +R
Sbjct: 206 YALRTFEKRMR 216


>gi|300311471|ref|YP_003775563.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 55.8 bits (133), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 4/77 (5%)

Query: 2   IPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTSM 61
           +P + N  I+LIK+++LVS++T+ +LM   +++I+V++R L +Y+A A +Y +L SL   
Sbjct: 147 VPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWML-SLCFE 205

Query: 62  ALQ-RVEKHLRADKATQ 77
           ALQ R+EK L   KA Q
Sbjct: 206 ALQHRLEKKL--GKAHQ 220


>gi|300313611|ref|YP_003777703.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score = 52.8 bits (125), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query: 1   MIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTS 60
           M+PPLGNE I L+K+S+LVS + +A+L +  + +     R  E YI ++++Y  +T   +
Sbjct: 172 MLPPLGNEAITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLA 231

Query: 61  MALQRVEKHLRAD 73
           + + R+E    A 
Sbjct: 232 LVVARLESKYSAP 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 154,233
Number of extensions: 2941
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)