BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0023.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [H...   138   8e-35

>gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  138 bits (348), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 71/92 (77%)

Query: 1   VSDEVKQQWIQHWIALGFGALEKQLAASPRRGRFCFGESPTMADCCLVPQIFNARRFNVD 60
           + DE K  WI HWI LGF ALE+QLAA   RG FC G++PTMADCCLVPQIFNARRF VD
Sbjct: 124 MDDERKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRFEVD 183

Query: 61  MTLYPTLVAIEENCNALKAFQMAQPSAQPDAA 92
           M  YPTL AIE+ C+AL AFQ A P+ QPDAA
Sbjct: 184 MAPYPTLCAIEQACHALPAFQQAHPAQQPDAA 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 299,316
Number of extensions: 9863
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)