BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0020.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310450|ref|YP_003774542.1| homogentisate 1,2-dioxygenase [...   741   0.0  

>gi|300310450|ref|YP_003774542.1| homogentisate 1,2-dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/445 (81%), Positives = 391/445 (87%), Gaps = 3/445 (0%)

Query: 1   MNTRAESFIAKAAINTVGYQSGFGNEFATEALPGALPANQNSPQQVAYGLYAEQLSGTAF 60
           MNT A  F     ++T GYQSGFGNEFATEALP ALPA+QNSPQ+VAYGLYAEQ+SGTAF
Sbjct: 1   MNT-ATDFSVSHHVHTRGYQSGFGNEFATEALPSALPAHQNSPQRVAYGLYAEQISGTAF 59

Query: 61  TAPRGHNRRSWLYRIRPAAMHAPFERMSNGL-IDRFDDAETPPNQYRWDPHAMPDAPTDF 119
           TAPRGHNRRSWLYRIRPAAMH PFE MS GL + RFDD   PPNQ RWDP  MP  PTDF
Sbjct: 60  TAPRGHNRRSWLYRIRPAAMHHPFEAMSQGLLVSRFDDVAPPPNQLRWDPLPMPTTPTDF 119

Query: 120 VAGLITMAGNGSPDAQTGCAIHLYAANQSMTDSYFYSADGELLIVPQAGRLQLLTELGAI 179
           + GL+TMAGNGSP AQ+GCAIHLYAAN SMTD +FYSADGELLIVPQ GRLQL TE+G I
Sbjct: 120 IDGLVTMAGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGELLIVPQMGRLQLRTEMGVI 179

Query: 180 DIEPQEIAVIPRGVRFQVKLPDGSAQGYVCENFGALLRLPDLGPLGSNGLANPRDFLTPH 239
           DIEPQEIAVIPRGVRFQV+LP G A+GY+CENFGALLRLPDLGPLGSNGLANPRDF TPH
Sbjct: 180 DIEPQEIAVIPRGVRFQVRLPGGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPH 239

Query: 240 AWYEDREGDFRLIAKFGGNLWQAKIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISYDHP 299
           AWYEDREGDF+LIAKFGG LWQA+IGHSPLDVVAWHGNYAPYKYDLR FNTIGSISYDHP
Sbjct: 240 AWYEDREGDFQLIAKFGGQLWQARIGHSPLDVVAWHGNYAPYKYDLRHFNTIGSISYDHP 299

Query: 300 DPSIFLVLQAQSDTPGVDTLDFVIFPPRWLAAENTFRPPWFHRNVASEFMGLIHGVYDAK 359
           DPSIFLVLQ+QSDTPGVDT+DFVIFPPRWLAAENTFRPPWFHRNVASE+MGLI G YDAK
Sbjct: 300 DPSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAK 359

Query: 360 -AEGFRPGGASLHNCMTGHGPDGATFEKAIRSDTSKPDKVGDTMAFMFETRNIIKPTRHA 418
              GF PGG SLHNCM+GHGPD ATFEKA R DTS P+KV  TMAFMFETRNI+ PTRHA
Sbjct: 360 EGGGFVPGGGSLHNCMSGHGPDAATFEKASRIDTSTPNKVDHTMAFMFETRNILCPTRHA 419

Query: 419 LSSPTLQKNYYQCWMDINKHFNPQH 443
           L+SP LQ++Y  CW+ I K+FNP+H
Sbjct: 420 LASPALQRDYQDCWLGIQKNFNPEH 444


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,648,031
Number of extensions: 76216
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)