BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0018.p (302 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310448|ref|YP_003774540.1| transcription regulator protein... 506 e-144 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 218 5e-58 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 210 1e-55 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 187 9e-49 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 157 9e-40 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 506 bits (1303), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/304 (81%), Positives = 273/304 (89%), Gaps = 3/304 (0%) Query: 1 MIEPKDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQG 60 +IEP+DIDLNLLVVFQEVFQ+RQISSVARRL LSQPAVSNALARLRR+F DELFVRTAQG Sbjct: 3 LIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQG 62 Query: 61 MQPTPFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETC 120 MQPTPFA+QLA+PVAAAL V++ALN QE F+ SAR FTIAMTDVGEVYFMP LIE C Sbjct: 63 MQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEAC 122 Query: 121 ARLAPGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSGALYQRRLFRQNYVSMFRQGH 180 AR APG+ ISTVRAGAIDLKSEMESGRVDLAIGAFDN+S ALYQRRLFRQ YVSMFR GH Sbjct: 123 ARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGH 182 Query: 181 PLS--GK-TVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIV 237 L G+ V++K+FLAA+HL+VSS ESPYDRINQNLEKAGI +V FRVPHFTAVPYIV Sbjct: 183 ALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIV 242 Query: 238 STTDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFISE 297 S+T L+VTVP+KLAESAA PF L+YI+PPLRLPSLQTN+FWHRR+NQDEGN WLRGFISE Sbjct: 243 SSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFISE 302 Query: 298 HFAE 301 HFAE Sbjct: 303 HFAE 306 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 218 bits (555), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 171/295 (57%), Gaps = 1/295 (0%) Query: 6 DIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQGMQPTP 65 + DLNLL + VF++R +S+ AR+L++SQPAVS AL +LR GD LFV+T +GMQPTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 66 FAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETCARLAP 125 A L P L V + + F+ A + + F +A++D+GE+ +P L+E AP Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 126 GIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSGA-LYQRRLFRQNYVSMFRQGHPLSG 184 + TV +L + +ESG VDLAIG F ++ +Q+RLF Q++V + R GHPL Sbjct: 123 HASVVTVTMAPAELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRAGHPLPA 182 Query: 185 KTVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIVSTTDLIV 244 + ++++ + AA H+VV + + L + IR V HF A+P +V+T+DL+ Sbjct: 183 QKISLEHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIPLLVATSDLVA 242 Query: 245 TVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFISEHF 299 TVP+ E + ++ + P +P L WHR++++D GN WLRG + F Sbjct: 243 TVPRAFGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLRGLAAALF 297 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 210 bits (535), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 167/294 (56%), Gaps = 3/294 (1%) Query: 5 KDIDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQGMQPT 64 ++DLNLL VFQ + +R ++ RL+LSQPAVS AL RLR+ F D LF+RT +GMQPT Sbjct: 5 NNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPT 64 Query: 65 PFAQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETCARLA 124 P A +LA P+ AL V AL E F A S R F +MTDV E+ F+P L E A Sbjct: 65 PAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQA 124 Query: 125 PGIQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSGALYQRRLFRQNYVSMFRQGHPLSG 184 P +++ + L+ + +G++D A G + LFR+ YV + RQ L Sbjct: 125 PDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGLPQ 184 Query: 185 KT-VTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIVSTTDLI 243 + + + +FLA H++V S ES + ++ + +K G++ ++ +PHFT +P I+ +DL+ Sbjct: 185 RAQLELDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLV 244 Query: 244 VTVPQKLAE--SAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFI 295 TVP ++A + P + P+ +P ++ + WH+ F+ D GN WLR + Sbjct: 245 ATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIV 298 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 187 bits (475), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 161/293 (54%) Query: 8 DLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQGMQPTPFA 67 DLNLL F +++ R +++ A RL+L+QPAVS+AL RLR F D LFVR+ M PT A Sbjct: 10 DLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETA 69 Query: 68 QQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETCARLAPGI 127 +L +P+A AL + +AL+ F A + R F + M+D+ + +PLL+E A AP + Sbjct: 70 IRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELAHAAPHV 129 Query: 128 QISTVRAGAIDLKSEMESGRVDLAIGAFDNVSGALYQRRLFRQNYVSMFRQGHPLSGKTV 187 I + +L + M +G VDLA G + + + +Y+ M R+ HPL+ + Sbjct: 130 SIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPEDCQSQLVLYDDYICMLRREHPLAQGPL 189 Query: 188 TMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPYIVSTTDLIVTVP 247 T+++ L +++ + + + L AG++ +V R+PHFT P IV TDL + +P Sbjct: 190 TLENLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHFTVAPQIVRITDLALFLP 249 Query: 248 QKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFISEHFA 300 + +AE + PL +P + +I+ H RF+ D G QWLR + E F Sbjct: 250 RSIAERNNLDHAFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQWLRSLLIEMFG 302 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 157 bits (398), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 12/301 (3%) Query: 7 IDLNLLVVFQEVFQDRQISSVARRLNLSQPAVSNALARLRRTFGDELFVRTAQGMQPTPF 66 +DLNLL VF V ++ ++ A L ++QPAVSNAL RLR T D+L +RTA G++PTP Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 Query: 67 AQQLADPVAAALMHVSKALNRQEAFSAAGSARHFTIAMTDVGEVYFMPLLIETCARLAPG 126 A++L V AL + +A+ E+F + + F +AM D ++P L+ T R AP Sbjct: 66 AEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 Query: 127 IQISTVRAGAIDLKSEMESGRVDLAIGAFDNVSGAL-----------YQRRLFRQNYVSM 175 I+I + D ++ + G +DLA+G F V+ L RL+ YV + Sbjct: 125 IKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVCV 184 Query: 176 FRQGHPLSGKTVTMKDFLAAQHLVVSSLESPYDRINQNLEKAGIRTNVNFRVPHFTAVPY 235 + HPL+G+ +T+ + A HL+VS P+ I+ L + V F Sbjct: 185 MHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFFTAGR 244 Query: 236 IVSTTDLIVTVPQKLAESAAQPFNLQYIRPPLRLPSLQTNIFWHRRFNQDEGNQWLRGFI 295 IV++++LI +P+ L + L P + P ++ WH R ++ ++WLR + Sbjct: 245 IVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWLRAHL 304 Query: 296 S 296 S Sbjct: 305 S 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 881,714 Number of extensions: 34138 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 13 Length of query: 302 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 217 Effective length of database: 1,217,395 Effective search space: 264174715 Effective search space used: 264174715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)