BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0193.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 523 e-149 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 155 4e-39 gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 149 3e-37 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 121 8e-29 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 105 6e-24 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 523 bits (1346), Expect = e-149, Method: Compositional matrix adjust. Identities = 271/308 (87%), Positives = 289/308 (93%), Gaps = 1/308 (0%) Query: 5 LNKKLFYGALLILALLAPFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGA 64 +NKK+ LLIL L APFG+YPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAF G A Sbjct: 1 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 Query: 65 GYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 124 GY+ GQA+K WG+PTE+GLI+GTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA Sbjct: 61 GYMCGQALKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 Query: 125 LQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLK 184 LQAPFTGGEDGLQG+PRGKLLGF++L SDMTLYYVVLAIA+AGFALIVRTIHSPFGQVLK Sbjct: 121 LQAPFTGGEDGLQGVPRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLK 180 Query: 185 AIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVL 244 AIKENEPRAISLGYDV RYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVL Sbjct: 181 AIKENEPRAISLGYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 Query: 245 MTLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIV 304 MTLVGGLGTI+GPIVGAVIIIMLENKLGDIG WLASVTHI+WFNTLGDSVTIVTGFIFIV Sbjct: 241 MTLVGGLGTILGPIVGAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIV 300 Query: 305 SCSLLRRR 312 C L R+ Sbjct: 301 -CVLAFRK 307 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 155 bits (392), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 146/226 (64%), Gaps = 6/226 (2%) Query: 30 LMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEIGLI--LGT 87 L ++L FA+ A + N ++GY G++SFGHA FFG YV AI ++ T LI L Sbjct: 32 LTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVT--AIASFHGVTSAWLIWLLAA 89 Query: 88 LTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGIPRGKLLGF 147 L AL+GLV+G++A+R + +YF MIT+ALAQ+ ++ + + GG+DGLQ R LLGF Sbjct: 90 LVTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGDDGLQVTAR-PLLGF 148 Query: 148 -IDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRYKLL 206 +D+S D Y+VVLA A F L+ R + S FG L AI++NE RA ++GY RYKL Sbjct: 149 GLDMSGDNAFYWVVLAWLAASFILLQRLLASRFGLALNAIRQNERRAQAIGYPALRYKLA 208 Query: 207 AFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLG 252 AFV++A + G+AGS + F + +HWS SG++++M +GG+G Sbjct: 209 AFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVG 254 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 151/255 (59%), Gaps = 12/255 (4%) Query: 32 KMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEIGLILGTLTGA 91 ++L FAL A NLL+GYTGL+SFG FFG Y AG + + L L L GA Sbjct: 32 EVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSYTAGVVLLQLKLALLPALALAALGGA 91 Query: 92 LIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQ-APFTGGEDGLQGIPRGKL----LG 146 L+ L++G +IR++G YF M+TLA AQM +F+A TGG++GL IPR L L Sbjct: 92 LVALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPLALFGLT 151 Query: 147 FIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRYKLL 206 + +S Y VV + + F L+ R + S G+ L A++ENE RA +LGYDV KL Sbjct: 152 LLPTTSSWQYYTVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYDVRLLKLA 211 Query: 207 AFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVIIIM 266 AFV+S A+TGLAG A++ G L+++ + S +++MT++GG G + ++GA ++ Sbjct: 212 AFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVLGASFYVL 271 Query: 267 LENKLGDIGNWLASV 281 +GNWL+++ Sbjct: 272 -------VGNWLSTL 279 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 121 bits (303), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 131/250 (52%), Gaps = 10/250 (4%) Query: 23 FGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEIG 82 F PV ++++L LFA + + L+G G++SFGHAA+FG Y A P + Sbjct: 344 FPYLPVLMVEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLRLQWPMPLA 403 Query: 83 LILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQ-APFTGGEDGLQGIPR 141 ++ G T L L+ G +R G+Y M+TLA AQ+++ Q TGG +GL G+ Sbjct: 404 MLAGAGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNGLVGLRT 463 Query: 142 GKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVD 201 L+S + YY+ L + G L+ R IH+PFG L+A ++ RA +LG DV Sbjct: 464 AA-----ALASPLAYYYLALLCSALGVYLLRRVIHAPFGLALRAARDASGRAQALGMDVR 518 Query: 202 RYKLLAFVLSAALTGLAGSTKALILG--FETLTDVHWSMSGLVVLMTLVGGLGTIVGPIV 259 + F L+ GLAG A G + V+ S+ GLV M L+GG+ ++ GP++ Sbjct: 519 ALQWGGFALAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLV--MVLLGGVQSLAGPLL 576 Query: 260 GAVIIIMLEN 269 GA + L++ Sbjct: 577 GASVFTWLQD 586 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 105 bits (261), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 146/279 (52%), Gaps = 12/279 (4%) Query: 5 LNKKLFYGALLILALLA--------PFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFG 56 +NKK+ +LL + LA P+ L+ + +L +A+ ++++GYTG +S G Sbjct: 1 MNKKILLLSLLGIVALAGIPMVVHNPYYLH--LIETILIYAILLFGLDIVVGYTGQVSLG 58 Query: 57 HAAFFGGAGYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLAL 116 HA FG Y AG G+P + + A+ G ++ L A+R G Y M+TLA Sbjct: 59 HAGLFGIGSYAAGVLFFKLGMPIFVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLAF 118 Query: 117 AQMLFFVALQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIH 176 ++ + + F +G GI K + D S++ +Y+V + + ++ R + Sbjct: 119 GTIIQILINEMTFL--TEGPLGIKLQKPMIGGDKMSEVQFFYLVAVLMVLSMLVVHRILK 176 Query: 177 SPFGQVLKAIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHW 236 S G+ +A++++ + +G V RYK+ AF++SAAL GL+G+ A + + ++ Sbjct: 177 SNLGRAFQALRDSPIASDCMGVSVYRYKVYAFIISAALAGLSGALYAYSEEYISPNTYNF 236 Query: 237 SMSGLVVLMTLVGGLGTIVGPIVGAVIIIMLENKLGDIG 275 ++ + +L ++GG + +G ++GA+I++ML + L DI Sbjct: 237 ELTIMFLLAVIMGGRKSRIGSLIGALIVVMLPSLLSDIA 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.146 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 693,188 Number of extensions: 22137 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 21 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)