BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0190.p (315 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312695|ref|YP_003776787.1| AraC family transcription regul... 305 5e-84 gi|300310394|ref|YP_003774486.1| AraC family transcription regul... 289 2e-79 gi|300309661|ref|YP_003773753.1| AraC family transcription regul... 62 6e-11 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 59 4e-10 >gi|300312695|ref|YP_003776787.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 305 bits (780), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 148/292 (50%), Positives = 196/292 (67%) Query: 21 TPDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGN 80 +PDLELV RQ +SF W H YP+ +WHFHPEYE+ +ITA+SGK+FVGDFIG F PGN Sbjct: 2 SPDLELVHTRQDQSFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGN 61 Query: 81 LVLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGL 140 LVL GPNLPHNW+S++ +QVP R +++QF F + A EL L+ +L A GL Sbjct: 62 LVLTGPNLPHNWVSNLGAHQQVPARDLVLQFSRPFAERVVGAIPELSPLQEMLDGAARGL 121 Query: 141 VFTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSS 200 F A GA+ P+M+ L G +R+ L +++L+ + + R LA GY +A +MSS Sbjct: 122 QFPDALGASITPLMQELAQASGARRVVLMMSVLERLASCPERKPLAGPGYDLNAQRHMSS 181 Query: 201 RLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACEL 260 LN VL I +NL +LRE+ LAEL S S+F+R F++HTG + IQY N LR+N ACEL Sbjct: 182 TLNQVLSCIRQNLGGNLRETDLAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACEL 241 Query: 261 LMQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQELNLASRNLA 312 LM +LS+T++C+RVGFNN+SNFNR FL KG+ PS FR LN R +A Sbjct: 242 LMCTELSVTEVCYRVGFNNLSNFNRQFLASKGMPPSRFRSLHRLNDDVRAVA 293 >gi|300310394|ref|YP_003774486.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 289 bits (740), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/279 (49%), Positives = 187/279 (67%), Gaps = 1/279 (0%) Query: 22 PDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGNL 81 PDLELV +R+GESFA W HGYP+RTVRWH+HPEYEI L+ ATSG+++VGD IG F PG L Sbjct: 3 PDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQL 62 Query: 82 VLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGLV 141 V+ GPNLP NWISD+A E VP R +++QFP + ++ + AE+ + LL + GL+ Sbjct: 63 VMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRGLL 122 Query: 142 FTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSR 201 F AT P+M+ L+ RG KR+ LF LLD++ LAS Y D SS Sbjct: 123 FDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNSSG 182 Query: 202 LNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGAC-EL 260 LN + ++ E+L D+ E LA++ Q+ S+FSR+F++HTG + ++Y N+LR++ AC L Sbjct: 183 LNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLAL 242 Query: 261 LMQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFR 299 L + ITDIC+ GF+N+SNFNRHF KG+SPS FR Sbjct: 243 LTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFR 281 >gi|300309661|ref|YP_003773753.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 39/273 (14%) Query: 53 PEYEIQ-----LITATSGKYFVGDFIGQFQPGNLVLLGPNLPH-NWISDVAPGEQVPERG 106 P++ +Q +I S + FVGD I ++ P + ++ +LP + +P E P G Sbjct: 77 PKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDE--PYLG 134 Query: 107 IIVQFP----GEFI-NHGIHAFAELHE----------LENLLLDAQAGLVFTPATGAAAL 151 + ++ GE I + + A A++ E L+ LLDA L+ A + Sbjct: 135 LRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAVLRLLRL-QERPADV 193 Query: 152 PIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSRLNHVLRFIAE 211 PI+ ++ +R L+ L++ G+ AL + D+ +R+ +R I E Sbjct: 194 PILAPMI-----RREILYRLLMN------GQGALLRQTVLQDS---QMNRVAKAIRLIKE 239 Query: 212 NLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACELLMQGDLSITDI 271 D LR +A S S+ F+ T MS +QY LR+ A +L++ D S+ Sbjct: 240 GYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATA 299 Query: 272 CFRVGFNNVSNFNRHFLIQKGVSP-SSFRKYQE 303 RVG+ + S F+R + G P R++QE Sbjct: 300 AHRVGYESSSQFSREYSRLFGAPPLRDKRRWQE 332 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 53/111 (47%) Query: 192 PDALAYMSSRLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINR 251 P + S R+ L ++ E++ + + S A+ S F R F++ TG + ++ + Sbjct: 245 PGEKRHRSERIQKALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTK 304 Query: 252 LRINGACELLMQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQ 302 +RI AC L + DL I I R G + + R F GVSP +RK + Sbjct: 305 IRIEAACLYLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKE 355 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 915,074 Number of extensions: 35439 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 4 Length of query: 315 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 230 Effective length of database: 1,217,395 Effective search space: 280000850 Effective search space used: 280000850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)