BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0181.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA...   798   0.0  

>gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 642

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/432 (87%), Positives = 408/432 (94%), Gaps = 3/432 (0%)

Query: 1   VLEEQPGDLDPIPVFSVMGNVGMHPQQMPCWITHTNTQTHDIIRAGLDRSPMYTGVIEGV 60
           +LEEQPGDLDP+PVFSVMGN  MHP+QMPCWITHTN++THDIIR GLDRSPMYTGVIEGV
Sbjct: 214 ILEEQPGDLDPVPVFSVMGNAAMHPRQMPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGV 273

Query: 61  GPRYCPSIEDKIHRFAGKDSHQIYLEPEGLTTNEFYPNGISTSLPFDVQLALVRSMRGME 120
           GPRYCPSIEDKIHRFA KDSHQIYLEPEGLTT+EFYPNGISTSLPFDVQL LVRSM+GME
Sbjct: 274 GPRYCPSIEDKIHRFASKDSHQIYLEPEGLTTHEFYPNGISTSLPFDVQLELVRSMKGME 333

Query: 121 NAHILRPGYAIEYDYFDPRGLKSSLETRQIQGLFFAGQINGTTGYEEAAAQGMLAGLNAA 180
           NAHILRPGYAIEYDY+DPRGLKSSLETRQ+QGLFFAGQINGTTGYEEAAAQGMLAG+NAA
Sbjct: 334 NAHILRPGYAIEYDYYDPRGLKSSLETRQVQGLFFAGQINGTTGYEEAAAQGMLAGINAA 393

Query: 181 LQTQGRDSWTPRRDEAYLGVLVDDLITQGVLEPYRMFTSRAEYRLSLREDNADLRLTEIG 240
           LQTQGR++WTPRRDEAYLGVLVDDL+TQGV EPYRMFTSRAEYRLSLREDNADLRLTEIG
Sbjct: 394 LQTQGREAWTPRRDEAYLGVLVDDLVTQGVQEPYRMFTSRAEYRLSLREDNADLRLTEIG 453

Query: 241 RQLGCVGDAQWEMFEKKREAVAREMERLKSTWVNPRILAEAEAERVLGKAIDHEYSLFDL 300
           R+LGCVGDAQWE F++KREAV+REMERLKSTWVNPRILA AEAERVLGKAI+ EY+L DL
Sbjct: 454 RELGCVGDAQWEAFDRKREAVSREMERLKSTWVNPRILAAAEAERVLGKAIEREYNLLDL 513

Query: 301 LRRPNVTYDSLMTLAGADGQALAGPGVSDDPVREQIEIQIKYAGYIDRQAKEIGRQEHNE 360
           LRRPNV+YDSLM L G +GQALAGPG+ D PVREQ+EIQ+KYAGYI RQA EI RQ+HNE
Sbjct: 514 LRRPNVSYDSLMGLTGTEGQALAGPGIEDGPVREQVEIQVKYAGYIARQADEISRQDHNE 573

Query: 361 SLKLPADLDYMEVQALSIEVRQKLNKHKPETLGQASRISGVTPAALSLLLVHLKKGGLKN 420
           +LKLPADLDYM+V+ALSIEVRQKLNKH+PETLGQASRISGVTPAALSLLLVHLKKGGLK 
Sbjct: 574 NLKLPADLDYMDVKALSIEVRQKLNKHRPETLGQASRISGVTPAALSLLLVHLKKGGLK- 632

Query: 421 VAEASANHNEAA 432
              A+A  N+AA
Sbjct: 633 --PATATDNQAA 642


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,341,578
Number of extensions: 57939
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)